PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55076.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GeBP
Protein Properties Length: 450aa    MW: 47976.8 Da    PI: 9.6051
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55076.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.84.3e-30199295397
        DUF573   3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                   ++rlws +De+++L+Gl +++ak g+   +++di ++++ ++ ++s++vs++ql++K+rrLK+K++   ++ak+g+e++++++hd++++e++kk+Wg
  MLOC_55076.1 199 PSRLWSHDDELLILRGLATYRAKSGVlpGSTNDIGKLHSHIRAQLSVRVSTTQLSDKVRRLKQKYQLLATRAKNGREQDLHTPHDRSVYEHAKKVWG 295
                   78************************877888****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-26200295IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAPKRSAATA WGSPSDASDA EADAGGHRRR DRDDPPSDTD PSKTPPPNPN PKSSAAAPSS  60
TLSVAADSAA AGSDSGGTYD SDAEAHRRPA PKPAASSPKP GGKPRARSPG INSDSADSAA  120
PAGSDADLDP AAGADSEDDN VSPLRSARHP RAEASIIKPI SSRPMDSPPR GGASASEPRV  180
KRPRSAAIAA PSPDQQRRPS RLWSHDDELL ILRGLATYRA KSGVLPGSTN DIGKLHSHIR  240
AQLSVRVSTT QLSDKVRRLK QKYQLLATRA KNGREQDLHT PHDRSVYEHA KKVWGLVGSG  300
GGDGGGSGYE NYGGGDSDEL QYSGDSDDDM ESQRDDRYHI KNRKVRPITA ANGNGIGLGA  360
VNANGRGKSG LEKGKDAYPY LWETVEELSK EHPSGAAFKK AFEVLEGSKA RAIEEKLRRF  420
RLTEIRQQLR RMDLMKETVR MVLDALESAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55076.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705900.0AK370590.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112N22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169455.10.0STOREKEEPER protein-like
TrEMBLA0A287RLT60.0A0A287RLT6_HORVV; Uncharacterized protein
STRINGMLOC_55076.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.17e-16DNA-binding storekeeper protein-related transcriptional regulator