PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_54810.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14666.9 Da PI: 7.7734 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.2e-13 | 20 | 103 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ ++lp kfa+ +g ++++l+l+ ++ W + + ++ + +++l++GW++F++a++L+ g f+++++dg++ ++kvf+ MLOC_54810.7 20 SLKKMRLPDKFARLLDGR--RPRELKLREagRQRLLWVMDVVFDADG-HMYLGRGWEQFARAHDLRLGHFLILSYDGHTVL--TMKVFD 103 345589******888888..455677776326668899999777776.6679***********************986555..777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.139 | 9 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.39E-15 | 10 | 103 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-18 | 11 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.9E-10 | 12 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-15 | 12 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-10 | 20 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF 60 DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTRRI 120 QDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_54810.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198708.1 | 7e-50 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q10Q26 | 3e-32 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A287MJP5 | 1e-82 | A0A287MJP5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_54810.2 | 6e-79 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 1e-12 | B3 family protein |
Publications ? help Back to Top | |||
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