PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54810.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 497aa    MW: 57293.9 Da    PI: 9.7149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54810.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.3e-12211031398
                   TT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  13 sgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++ ++lp kfa+  +g   ++++l+l+   ++   W + + ++  + +++l++GW++F++a++L+ g f+++++dg++    ++kvf+
  MLOC_54810.2  21 LKKMRLPDKFARLLDGR--RPRELKLREagRQRLLWVMDVVFDADG-HMYLGRGWEQFARAHDLRLGHFLILSYDGHTVL--TMKVFD 103
                   45589******888888..455677776326668899999777776.6679***********************986555..777776 PP
2B343.94.2e-144184962098
                   HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3  20 kkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                    kfa +h+  k++++ l l+ e   rsW  kl  + +s++    kGW +F+++n+L+egD ++Fkl+++ +   ++v ++r
  MLOC_54810.2 418 EKFAVSHDRGKHSGIYLLLRLEGKiRSWPTKL--QHSSRGSKVLKGWPSFARDNRLREGDLCLFKLMKNeEPLMMMVYIVR 496
                   6899999666777766666665548*******..66666644445**********************98899999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.1399105IPR003340B3 DNA binding domain
CDDcd100173.32E-1510103No hitNo description
SuperFamilySSF1019365.89E-1711111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1412107IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-1012105IPR003340B3 DNA binding domain
PfamPF023622.7E-920103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-11190284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-10191285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-7196280No hitNo description
PROSITE profilePS508636.936197295IPR003340B3 DNA binding domain
SMARTSM010190.24198298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-13378494IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-12379496IPR015300DNA-binding pseudobarrel domain
CDDcd100175.27E-11383496No hitNo description
SMARTSM010193.5E-4391496IPR003340B3 DNA binding domain
PfamPF023626.4E-12415497IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293443497IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF  60
DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTILQ  120
GVSKMSNPCD SDGSQNERSY SSEELSEDSL SVDNSVESAN LKKLSNNYAL SSHCRLTKAQ  180
KMKINAVVKK IKPKFKMLVV QMKKSNIRRY TLEIPKDYAL KHFPCEDTSI TLQLPRKNKN  240
WKCKLYVRPS GVAGAGRCSL YVGKFVHDTH VREGDIYLFE PMTNVKQRRY VMTAHPLHEA  300
CSDHSAGGRT NIGSNHRRTC AKMGDVKDKT PTDGEEYSSK HEELEVSQDS EETLFMLDDG  360
AYLTPAQEMK SLEKVEEIKF KPPFYVVIMS KSTVCQRGSQ NNPMLRFGSQ YTAKYFGEKF  420
AVSHDRGKHS GIYLLLRLEG KIRSWPTKLQ HSSRGSKVLK GWPSFARDNR LREGDLCLFK  480
LMKNEEPLMM MVYIVRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54810.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198705.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLA0A287MJP00.0A0A287MJP0_HORVV; Uncharacterized protein
TrEMBLN1QU520.0N1QU52_AEGTA; B3 domain-containing protein
STRINGMLOC_54810.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-10B3 family protein