PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_54227.1 | ||||||||
Common Name | CBF4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24549.9 Da PI: 8.3329 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.6e-16 | 42 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ + g+Wv+e+r+p g k r +lg+f +e+Aa+a++aa ++l g MLOC_54227.1 42 LYRGVRRRGRVGQWVCEVRVP---GiKGSRLWLGTFTNPEMAARAHDAAVLALSG 93 69******************9...8777*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 41 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.35 | 42 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-20 | 42 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-18 | 42 | 103 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-27 | 42 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.72E-16 | 55 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDVADIASPS GQQKQQGHRT VSSEPPKRPA GRTKFHETRH PLYRGVRRRG RVGQWVCEVR 60 VPGIKGSRLW LGTFTNPEMA ARAHDAAVLA LSGRAACLNF ADSAWRMRPV LATTGSFGFS 120 STREIKLAVA VAVVAFQQQQ IILPVACPSP EAPASPSAAL FYISSGDLLE LDEEQWFGGM 180 DAGSYYASLA QGMLVAPPDE RARPENREHS GVETPIPLWS YLFDC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_54227.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF298230 | 0.0 | AF298230.1 Hordeum vulgare CBF1-like protein BCBF1 (BCBF1) mRNA, complete cds. | |||
GenBank | AY785848 | 0.0 | AY785848.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF4B (CBF4B) mRNA, complete cds. | |||
GenBank | JF796657 | 0.0 | JF796657.1 Hordeum vulgare isolate T3 CBF protein 4 (CBF4) gene, complete cds. | |||
GenBank | JX271895 | 0.0 | JX271895.1 Hordeum vulgare f. agriocrithon isolate XZ3 CBF4 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167753.1 | 1e-122 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q3T5N4 | 2e-48 | DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B | ||||
Swissprot | Q8GUW4 | 2e-48 | DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B | ||||
TrEMBL | C1IJC2 | 1e-165 | C1IJC2_HORVU; CBF protein 4 | ||||
TrEMBL | J9V998 | 1e-165 | J9V998_HORVV; CBF4 | ||||
TrEMBL | Q9AXQ1 | 1e-165 | Q9AXQ1_HORVV; CBF1-like protein BCBF1 | ||||
STRING | MLOC_54227.1 | 1e-165 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 6e-26 | dehydration response element B1A |
Publications ? help Back to Top | |||
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