PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54060.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 376aa    MW: 43657.7 Da    PI: 7.8552
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54060.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.3e-15511321098
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++  + +p kf+e+++g    s  ++le ++g+ ++v+    k  ++++l++GW  Fv+  ++keg f+vF+++g+s f  +v +f+
  MLOC_54060.6  51 NFQE-KMAIPQKFVENFKGR--ISEAIKLEAPDGNIYNVQA--IKDLNKIILGSGWAVFVSFYEVKEGYFLVFRYIGDSHF--KVLIFD 132
                   4444.499******999777..6778***************..999999****************************9999..888876 PP
2B349.11.1e-152112901398
                   TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++ +++p kf++++ g    s  ++le ++g+ +++k+  +k  +++vl++GW  F+ a +Lke D +vF+++g s f  +v +f+
  MLOC_54060.6 211 HQEISIPEKFVKNFRGR--ISEVMKLEAPDGNIYNIKV--TKDLNKIVLRSGWAAFATAYELKEYDLLVFRYIGASHF--KVVIFD 290
                   4669*******888766..6779***************..**********************************9999..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-2137136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-2038132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.67341134IPR003340B3 DNA binding domain
CDDcd100171.26E-1742132No hitNo description
SMARTSM010197.8E-844134IPR003340B3 DNA binding domain
PfamPF023628.3E-1345132IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-20197294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561199292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-19199294IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-7202292IPR003340B3 DNA binding domain
CDDcd100173.26E-17209290No hitNo description
PfamPF023621.1E-13211290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVPDQDHEKG NRSGHNISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ  60
KFVENFKGRI SEAIKLEAPD GNIYNVQAIK DLNKIILGSG WAVFVSFYEV KEGYFLVFRY  120
IGDSHFKVLI FDFENCCEKE VFHALMNCGP NAQEKDAHLD RSPLSERRCQ NGGSSNGEPH  180
PRCEHCDVHF YWHHMDDMQK HFLRLMFGNF HQEISIPEKF VKNFRGRISE VMKLEAPDGN  240
IYNIKVTKDL NKIVLRSGWA AFATAYELKE YDLLVFRYIG ASHFKVVIFD PSGCEKQLFH  300
IVMNHAPNVQ KRGISDDRSF LRETRRLDCE SHDSNSRKTK KMTPLDSPSP RSGKKIEGLH  360
VHFPCYPFCS YSLISS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54060.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLM0WRM50.0M0WRM5_HORVV; Uncharacterized protein
STRINGMLOC_54060.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-18B3 family protein