PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54060.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 677aa    MW: 78056 Da    PI: 7.4778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54060.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14511321098
                   HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++++  + +p kf+e+++g    s  ++le ++g+ ++v+    k  ++++l++GW  Fv+  ++keg f+vF+++g+s f  +v +f+
  MLOC_54060.1  51 NFQE-KMAIPQKFVENFKGR--ISEAIKLEAPDGNIYNVQA--IKDLNKIILGSGWAVFVSFYEVKEGYFLVFRYIGDSHF--KVLIFD 132
                   4444.499******999777..6778***************..999999****************************9999..888876 PP
2B347.72.7e-152112901398
                   TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++ +++p kf++++ g    s  ++le ++g+ +++k+  +k  +++vl++GW  F+ a +Lke D +vF+++g s f  +v +f+
  MLOC_54060.1 211 HQEISIPEKFVKNFRGR--ISEVMKLEAPDGNIYNIKV--TKDLNKIVLRSGWAAFATAYELKEYDLLVFRYIGASHF--KVVIFD 290
                   4669*******888766..6779***************..**********************************9999..888887 PP
3B339.41.1e-12410496694
                   ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
            B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                   +++ +++++ lv+ k++a+++    +e++ +tl ++s  s  + +    ++g+++l++GW+ Fv  n+L+e D++vF+++++  e ++vv
  MLOC_54060.1 410 MNKTSMARS-LVICKDYAAKYLP--HEDQFITLCHPSKSSTWIDHLKVITDGSCMLSAGWSCFVLHNELRESDVCVFEVSQStGEMTMVV 496
                   455566665.***********42..3455799999888666667767888899*************************887544444444 PP
4B350.53.7e-16574668599
                   -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                   l +++v+++ ++l +pk+fa++h    ++s +++l  ++g ++W+v + y  + ++ + ++ W +Fv +n+L+eg ++vF+l++  ++++++v+vf 
  MLOC_54060.1 574 LQKNHVSRKpNLLFIPKEFAAKHLA--ARSHDIMLLRPNGkKKWRVWYYYHSTFRG-FNGTPWTKFVCDNELREGYICVFELIKGvHKATMFVHVFT 667
                   5556666666999**********53..36779*****999899*****55555544.5788**********************888*********97 PP

                   S CS
            B3  99 k 99 
                   k
  MLOC_54060.1 668 K 668
                   5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2037136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-1938132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.67341134IPR003340B3 DNA binding domain
CDDcd100171.09E-1742132No hitNo description
SMARTSM010197.8E-844134IPR003340B3 DNA binding domain
PfamPF023622.1E-1245132IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-19197294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561199292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18199294IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-7202292IPR003340B3 DNA binding domain
CDDcd100173.10E-17209290No hitNo description
PfamPF023622.7E-13211290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-16401498IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-18403500IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.644404500IPR003340B3 DNA binding domain
CDDcd100178.03E-10404498No hitNo description
SMARTSM010190.014406500IPR003340B3 DNA binding domain
PfamPF023621.1E-9413497IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-18563667IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-18564667IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-15568666No hitNo description
SMARTSM010195.1E-11570668IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674571669IPR003340B3 DNA binding domain
PfamPF023623.5E-14573668IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MVPDQDHEKG NRSGHNISSK SFQRCEGCDA HYYWCHMDDT QKYFFKCMVG NFQEKMAIPQ  60
KFVENFKGRI SEAIKLEAPD GNIYNVQAIK DLNKIILGSG WAVFVSFYEV KEGYFLVFRY  120
IGDSHFKVLI FDFENCCEKE VFHALMNCGP NAQEKDAHLD RSPLSERRCQ NGGSSNGEPH  180
PRCEHCDVHF YWHHMDDMQK HFLRLMFGNF HQEISIPEKF VKNFRGRISE VMKLEAPDGN  240
IYNIKVTKDL NKIVLRSGWA AFATAYELKE YDLLVFRYIG ASHFKVVIFD PSGCEKQLFH  300
IVMNHAPNVQ KRGISDDRSF LRETRRLDCE SHDSNSRKTK KMTPLDSPSP RSAEGVTSPE  360
DTMNSGGLWE TTEARYVLAI GCNLTTGQKA EIDALVKKVR PVIPFYITAM NKTSMARSLV  420
ICKDYAAKYL PHEDQFITLC HPSKSSTWID HLKVITDGSC MLSAGWSCFV LHNELRESDV  480
CVFEVSQSTG EMTMVVHSLE RGHHLQDEEP ESQNKCNYPV KSKAIMEESD EEYAESKSNY  540
YYSKYAKGLT GEEQEDIFRS VLIQQGNPVY IAVLQKNHVS RKPNLLFIPK EFAAKHLAAR  600
SHDIMLLRPN GKKKWRVWYY YHSTFRGFNG TPWTKFVCDN ELREGYICVF ELIKGVHKAT  660
MFVHVFTKVD GRLVLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1607616RPNGKKKWRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLM0WRM30.0M0WRM3_HORVV; Uncharacterized protein
STRINGMLOC_54060.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-23B3 family protein