PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54039.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 234aa    MW: 26996.3 Da    PI: 6.673
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54039.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13158204147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WT+eE+ l++++    G g Wk I++++ + Rt+ q+ s+ qky
     MLOC_54039.1 158 KGFWTPEEHRLFLHGLSVCGRGKWKDISKHFVTSRTPIQISSHAQKY 204
                      688*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.826153209IPR017930Myb domain
SMARTSM007176.3E-10157207IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-11158204IPR009057Homeodomain-like
SuperFamilySSF466892.37E-16159210IPR009057Homeodomain-like
PfamPF002491.0E-9159204IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.0E-12160207IPR006447Myb domain, plants
CDDcd001671.40E-8161205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNPRFNQERI PSEVEGGRTI IDGLNNYYYN DDTNHDKNKK NDIAAKLQTW FPRKTMPQVT  60
NMYGDLAAEM HMLQCTEKEY HGTNGEHGVN YTVDGHVNKT FGFQEEAAME GTDFLFGCPL  120
DNRQTMDNQE EVSMVEQNKV VLENKTCIHQ PVLAPCAKGF WTPEEHRLFL HGLSVCGRGK  180
WKDISKHFVT SRTPIQISSH AQKYFMRLKN KGSRSQRYSI NDVELDDSGP WKME
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156757.11e-112uncharacterized protein LOC109742093
TrEMBLA0A287VQD01e-179A0A287VQD0_HORVV; Uncharacterized protein
STRINGMLOC_54039.11e-179(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.21e-22MYB_related family protein