PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53697.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WOX | ||||||||
Protein Properties | Length: 248aa MW: 27267.6 Da PI: 8.6869 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 45.8 | 1.1e-14 | 2 | 50 | 14 | 57 |
HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ MLOC_53697.2 2 ILEEMYRGgLRTPTASQIQQITAHLahygRIEGKNVFYWFQNHKARDRQ 50 8******99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 92 | 5.5e-30 | 1 | 51 | 14 | 64 |
Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +iLee+y+ GlrtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk MLOC_53697.2 1 MILEEMYRGGLRTPTASQIQQITAHLAHYGRIEGKNVFYWFQNHKARDRQK 51 69************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.604 | 1 | 51 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-4 | 2 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-6 | 2 | 51 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-12 | 2 | 50 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MILEEMYRGG LRTPTASQIQ QITAHLAHYG RIEGKNVFYW FQNHKARDRQ KLRRRLCMSH 60 HLLSCAHYYA AAKAGQYHHQ QQQLLGGAAV PPPVLQHQHQ QPQPQQQYYS SPCPGGGHDH 120 HLLPTTVPAA AAYAAAAAAG YGYPLAAVPA SRCADPSLSP PNTPLSFHHQ GGGVVVGSPE 180 YSLGRLGSFQ VVEDTCRPSR YEQQQPQHLA AATEDQAASV TATGLFWRPV RLQTLDLFPG 240 AIKEEQQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53697.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 1e-78 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. | |||
GenBank | KJ726946 | 1e-78 | KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164197.1 | 1e-121 | putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A287ELS5 | 0.0 | A0A287ELS5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_53697.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-30 | WOX family protein |