PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53442.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 906aa    MW: 100079 Da    PI: 7.7268
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53442.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.33.3e-20116212290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                    Y+ YA+++GF+vr++++++sk++ge+t+ +f Cs+eg+++++ +        +  +  + +  rtgC+a+l+++++k  g ++v+ ++  HnH+l+
  MLOC_53442.8 116 LYRLYASKLGFNVRRRYTNRSKTSGEVTSCKFACSREGFKDHKPTGatarlprAAAAAVPAPDGRTGCNAHLTLRRSKpGGSFQVSGFQPRHNHPLF 212
                   79****************************************99988888877677777999****************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-17116212IPR004330FAR1 DNA binding domain
PfamPF105513.6E-16331410IPR018289MULE transposase domain
PROSITE profilePS509669.891600636IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-5611638IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MSSPSDSGHI PAPPHHPLPP FAPPPGPGPG PSPATHAASP PKPKSPIPTT APPPPPEPNA  60
FSRSSPADTT SAMAAASSRS SPAARPEDHQ SPPSIAEDCT PRMDMEFETE LQGYDLYRLY  120
ASKLGFNVRR RYTNRSKTSG EVTSCKFACS REGFKDHKPT GATARLPRAA AAAVPAPDGR  180
TGCNAHLTLR RSKPGGSFQV SGFQPRHNHP LFAAHRSPHS PFHSPSNAAA VPIPDFVDGD  240
ATAGAAWAEG EGPLRTRRQW EIKYGEAAAL LNHLQQQSLA DPAFHHAVQL DVEDKVANVF  300
WVDAKMVADY GHFGDAVAFD VVSRNSISLR HLASFVGCNS FGEPVVFGLA LMYDETCESF  360
RWLFQTFLRV MSGRAPKTFV SHQDTVIAEA LSLAMPATTT THAICTWHIR HTAKANIRQL  420
SKGDANFIEE FKACVDGEYD VGAEFLAAWD SMISKHELRD NAWLQKLFEE KQKWARPYAK  480
GIFSAGMEGT RLNERLNSEV RGHLRAEVDI VLFLRHLQKV IVDRRHRELE MEYGSRQMMP  540
YLKIRAPVLT QASEVYTSVI FQLFQEEYEE FQSAYIASRD ESGPCREYVV SLVEKEDRRY  600
MVYGNPTEQT VSCSCGKFET VGFLCSHALK ILDVMDIKYI PERYIMKRWT KYARRLTSPP  660
EVLGLGQAVQ AEESSEISSR YQHLCPKYVR LVARASECEE SSRVLDQFWG ELGEKVEQIL  720
KKQTSTSAPV TQPDVQNLKM ALSSITSGTE SENVPDISSR AAAKTVKKKG QKSKNHPRNC  780
IEKGPTKKQR VHSEEPAVVQ YGFTDAPPAH SGNSMYQGLE APPPNMSEMG SQIPAYKAYM  840
GTDFSKSMGT INYEGMRPGS SLGFILLASE ELGFVPCACH TSQASNDSQH SQVRCGTIHK  900
GLFPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53442.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731260.0AK373126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021N16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316849.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
RefseqXP_024316852.10.0protein FAR1-RELATED SEQUENCE 9 isoform X1
TrEMBLF2EAF10.0F2EAF1_HORVV; Predicted protein
STRINGMLOC_53442.80.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-71FAR1-related sequence 7