PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_53442.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 894aa MW: 98703.4 Da PI: 7.5241 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.4 | 3.3e-20 | 116 | 212 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y+ YA+++GF+vr++++++sk++ge+t+ +f Cs+eg+++++ + + + + + rtgC+a+l+++++k g ++v+ ++ HnH+l+ MLOC_53442.7 116 LYRLYASKLGFNVRRRYTNRSKTSGEVTSCKFACSREGFKDHKPTGatarlprAAAAAVPAPDGRTGCNAHLTLRRSKpGGSFQVSGFQPRHNHPLF 212 79****************************************99988888877677777999****************9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-17 | 116 | 212 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.5E-16 | 331 | 410 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.891 | 600 | 636 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.9E-5 | 611 | 638 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 894 aa Download sequence Send to blast |
MSSPSDSGHI PAPPHHPLPP FAPPPGPGPG PSPATHAASP PKPKSPIPTT APPPPPEPNA 60 FSRSSPADTT SAMAAASSRS SPAARPEDHQ SPPSIAEDCT PRMDMEFETE LQGYDLYRLY 120 ASKLGFNVRR RYTNRSKTSG EVTSCKFACS REGFKDHKPT GATARLPRAA AAAVPAPDGR 180 TGCNAHLTLR RSKPGGSFQV SGFQPRHNHP LFAAHRSPHS PFHSPSNAAA VPIPDFVDGD 240 ATAGAAWAEG EGPLRTRRQW EIKYGEAAAL LNHLQQQSLA DPAFHHAVQL DVEDKVANVF 300 WVDAKMVADY GHFGDAVAFD VVSRNSISLR HLASFVGCNS FGEPVVFGLA LMYDETCESF 360 RWLFQTFLRV MSGRAPKTFV SHQDTVIAEA LSLAMPATTT THAICTWHIR HTAKANIRQL 420 SKGDANFIEE FKACVDGEYD VGAEFLAAWD SMISKHELRD NAWLQKLFEE KQKWARPYAK 480 GIFSAGMEGT RLNERLNSEV RGHLRAEVDI VLFLRHLQKV IVDRRHRELE MEYGSRQMMP 540 YLKIRAPVLT QASEVYTSVI FQLFQEEYEE FQSAYIASRD ESGPCREYVV SLVEKEDRRY 600 MVYGNPTEQT VSCSCGKFET VGFLCSHALK ILDVMDIKYI PERYIMKRWT KYARRLTSPP 660 EVLGLGQAVQ AEESSEISSR YQHLCPKYVR LVARASECEE SSRVLDQFWG ELGEKVEQIL 720 KKQTSTSAPV TQPDVQNLKM ALSSITSGTE SENVPDISSR AAAKTVKKKG QKSKNHPRNC 780 IEKGPTKKQR VHSEEPAVVQ YGFTDAPPAH SGNSMYQGLE APPPNMSEMG SQIPAYKAYM 840 GTDFSKSMGT INYEGMRPGS SLGFILLASE ELGFVPCACH TSQASNDSQH SQAP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_53442.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373126 | 0.0 | AK373126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021N16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316849.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 isoform X1 | ||||
Refseq | XP_024316852.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9 isoform X1 | ||||
TrEMBL | F2EAF1 | 0.0 | F2EAF1_HORVV; Predicted protein | ||||
STRING | MLOC_53442.8 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-71 | FAR1-related sequence 7 |