PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_52271.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 25711.8 Da PI: 6.4244 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.7 | 1.1e-32 | 43 | 97 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFv++v++LGG+++AtPk il+lm+ +gLt++h+kSHLQkYR+ MLOC_52271.5 43 KTRIRWTPELHERFVDCVSKLGGADRATPKGILKLMNSDGLTIYHIKSHLQKYRM 97 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.658 | 40 | 100 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.76E-18 | 41 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-30 | 42 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-24 | 43 | 98 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-10 | 47 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.8E-22 | 134 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
PAAGSFHGHE YALKLQLAAR SSVGAPATPT GAGSVSAPPP PSKTRIRWTP ELHERFVDCV 60 SKLGGADRAT PKGILKLMNS DGLTIYHIKS HLQKYRMAKY MPAPSSSSSS EGKQHEKRAA 120 GGDTQHDLDP KTGMHITEAL RVQLDVQRRL HEQLEIQRRL QVRIEEQGKR LQKMFEDQLK 180 ASGGNSAPAA PDPNTVLFPA AAAGDQEEDA VFVDDDDDEV QIISVASGSY DDELLAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-25 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-25 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-25 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-25 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-25 | 43 | 100 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_52271.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK370962 | 0.0 | AK370962.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2121B01. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165250.1 | 1e-117 | uncharacterized protein LOC109750710 isoform X1 | ||||
Refseq | XP_020165251.1 | 1e-117 | uncharacterized protein LOC109750710 isoform X2 | ||||
Swissprot | Q0WVU3 | 3e-57 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
Swissprot | Q9SJW0 | 3e-58 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | F2E488 | 1e-174 | F2E488_HORVV; Predicted protein (Fragment) | ||||
STRING | MLOC_52271.4 | 1e-157 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-58 | G2-like family protein |