PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5226.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 436aa    MW: 49845.6 Da    PI: 6.9836
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5226.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.81.7e-24117212186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 
                  +Wt ++v++Li+a ++++e+ +++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t + ++++ +++d+++
  MLOC_5226.1 117 KWTGSMVKLLITAASYTGEDPGADLggrrnitivQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCCVVENPALLDSMH 212
                  7*********************974455677788**********************************************5499999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-18115238No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MESSNLPTGN MMQGTPYGSL NVHGNSMQMH ASSSGKQLFN QSQMLGSFAM PINRATEPHN  60
HGFQFGEHEK RDHHHHHQHS HHSKNSISDE EEHDMTEDVT DTQNGKGKKG SAWHRMKWTG  120
SMVKLLITAA SYTGEDPGAD LGGRRNITIV QKKGKWKAIS KVMGERGCSV SPQQCEDKFN  180
DLNKRYKRLT DILGRGTACC VVENPALLDS MHNLSDKMKE DARKILNSKH LFYEQMCSYH  240
NNNRVNLPED PALQHSLQVA LRCKEEHDLR RDTSGDLEED EQSADSDYEE HDEERQTVHT  300
NLRDSSMNKR MCHAVDHGDV GFVTSSSNGV SGRFDPHGIT LDMNNAFPGG ANLSFVQKDL  360
TSQLVELQKH RLQIQEQKLE VTKQRLKWER FRMKKDREIE RLALENEQKM FQHKHLEIQL  420
RDKELELELK GNANHA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669360.0AK366936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174820.10.0uncharacterized protein LOC109760399
TrEMBLF2DSR80.0F2DSR8_HORVV; Predicted protein
STRINGMLOC_5226.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-93sequence-specific DNA binding transcription factors