PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52106.8

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 539aa MW: 58592.6 Da PI: 5.8214

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52106.8	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.6e-06	303	325	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H MLOC_52106.8 303 KSKPCTHFAR-GSCLKGDECPYDH 325 6789****.*********** PP
2	zf-CCCH	22.3	2.2e-07	331	352	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++G C +Gd+CkF+H+ MLOC_52106.8 331 PCHNFVENGMCFRGDKCKFSHV 352 7********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.455	272	299	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-5	273	297	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.093	273	298	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-4	300	326	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-5	301	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.122	301	328	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	303	326	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0037	329	353	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-5	330	354	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-4	331	352	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.864	331	354	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.8E-4	331	351	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MAGVQRAEGV KDMVVGGNVC RETVALVEEL MAEDVLRSMK DCLEGEVDEL VEPDVVVVND 60 DDHLLLDTMM TNFSGLIADA SGGTTSMLNM AEGVKELGAG TEEDRPVGDS DQHSVDGGVV 120 EEGEIEGDMQ ALDVDESDDS ELEVAGDEEL EEDFANRVLE ENESSGQGVR CLNLLSTPKI 180 KGTSDLVLNK EGSIKDDALK HVTRAQAVSY DEIVEWNETP LHDAEAPKQG KRKRLLTEER 240 KAKKTKNKRV KRAQQRIADG VKKLKLAPVI KPKPVKFCHF YMHGKCQLGN ACKFSHDTTP 300 LTKSKPCTHF ARGSCLKGDE CPYDHELSKY PCHNFVENGM CFRGDKCKFS HVVPTADCPS 360 KPDAKKSNAS VSEKPGREQI SSQKASTVHD GEHVTSAPTK HHSILKNLAT ISVNAQKTST 420 GIPKGVQFRP LCKDRSNSSM LLQDALPTEK HMYTNGSKHQ NFGGPQAAEG DKNANPNKQI 480 SAPLFDENSS KEASSHRSSD PKRTSLPIGS TTVVGSLSNQ HGVSEASRIL QEFLFGAGS

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MAGVQRAEGV KDMVVGGNVC RETVALVEEL MAEDVLRSMK DCLEGEVDEL VEPDVVVVND  60
DDHLLLDTMM TNFSGLIADA SGGTTSMLNM AEGVKELGAG TEEDRPVGDS DQHSVDGGVV  120
EEGEIEGDMQ ALDVDESDDS ELEVAGDEEL EEDFANRVLE ENESSGQGVR CLNLLSTPKI  180
KGTSDLVLNK EGSIKDDALK HVTRAQAVSY DEIVEWNETP LHDAEAPKQG KRKRLLTEER  240
KAKKTKNKRV KRAQQRIADG VKKLKLAPVI KPKPVKFCHF YMHGKCQLGN ACKFSHDTTP  300
LTKSKPCTHF ARGSCLKGDE CPYDHELSKY PCHNFVENGM CFRGDKCKFS HVVPTADCPS  360
KPDAKKSNAS VSEKPGREQI SSQKASTVHD GEHVTSAPTK HHSILKNLAT ISVNAQKTST  420
GIPKGVQFRP LCKDRSNSSM LLQDALPTEK HMYTNGSKHQ NFGGPQAAEG DKNANPNKQI  480
SAPLFDENSS KEASSHRSSD PKRTSLPIGS TTVVGSLSNQ HGVSEASRIL QEFLFGAGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52106.8

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365851	0.0	AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184316.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184317.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184318.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184319.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_020184320.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	1e-180	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	F2DPN3	0.0	F2DPN3_HORVV; Predicted protein
STRING	MLOC_52106.12	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	8e-08	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]