PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52106.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C3H | ||||||||
Protein Properties | Length: 539aa MW: 58592.6 Da PI: 5.8214 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.6e-06 | 303 | 325 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H MLOC_52106.10 303 KSKPCTHFAR-GSCLKGDECPYDH 325 6789******.************* PP | |||||||
2 | zf-CCCH | 22.3 | 2.2e-07 | 331 | 352 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++G C +Gd+CkF+H+ MLOC_52106.10 331 PCHNFVENGMCFRGDKCKFSHV 352 7********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 273 | 297 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.093 | 273 | 298 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.122 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0037 | 329 | 353 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 330 | 354 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 331 | 352 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.864 | 331 | 354 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 331 | 351 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MAGVQRAEGV KDMVVGGNVC RETVALVEEL MAEDVLRSMK DCLEGEVDEL VEPDVVVVND 60 DDHLLLDTMM TNFSGLIADA SGGTTSMLNM AEGVKELGAG TEEDRPVGDS DQHSVDGGVV 120 EEGEIEGDMQ ALDVDESDDS ELEVAGDEEL EEDFANRVLE ENESSGQGVR CLNLLSTPKI 180 KGTSDLVLNK EGSIKDDALK HVTRAQAVSY DEIVEWNETP LHDAEAPKQG KRKRLLTEER 240 KAKKTKNKRV KRAQQRIADG VKKLKLAPVI KPKPVKFCHF YMHGKCQLGN ACKFSHDTTP 300 LTKSKPCTHF ARGSCLKGDE CPYDHELSKY PCHNFVENGM CFRGDKCKFS HVVPTADCPS 360 KPDAKKSNAS VSEKPGREQI SSQKASTVHD GEHVTSAPTK HHSILKNLAT ISVNAQKTST 420 GIPKGVQFRP LCKDRSNSSM LLQDALPTEK HMYTNGSKHQ NFGGPQAAEG DKNANPNKQI 480 SAPLFDENSS KEASSHRSSD PKRTSLPIGS TTVVGSLSNQ HGVSEASRIL QEFLFGAGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52106.10 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365851 | 0.0 | AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184316.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184317.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184318.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184319.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_020184320.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 1e-180 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | F2DPN3 | 0.0 | F2DPN3_HORVV; Predicted protein | ||||
STRING | MLOC_52106.12 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 8e-08 | C3H family protein |
Publications ? help Back to Top | |||
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