PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20544.9 Da PI: 9.2264 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.9 | 4e-16 | 13 | 54 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+++s r + kR++g++KKA E+ +LCd++ +v++++++ MLOC_51323.1 13 ISDDSTRRSRYKKRLKGLMKKADEMATLCDVDTCVVVYGEDE 54 899999999******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-9 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.021 | 3 | 52 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.93E-23 | 4 | 88 | No hit | No description |
SuperFamily | SSF55455 | 9.68E-18 | 6 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-14 | 13 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MARAPKKATL GYISDDSTRR SRYKKRLKGL MKKADEMATL CDVDTCVVVY GEDEAAPVVF 60 PSPAAKAVGI LKEFNGMPEL GHCKKTMDQE GLLTQRIARL REQIDRSRRE CHDSEIRYLL 120 QKIMQGNLPG LVGLTMEQLV GVGYKVDELL KSMAERTGKT HPQPPPPAPC VTPALRLQAP 180 AQQQD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51323.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372761 | 0.0 | AK372761.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3011L24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174656.1 | 8e-72 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M0WGT7 | 1e-133 | M0WGT7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_51323.1 | 1e-134 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-24 | AGAMOUS-like 80 |