PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_51314.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 270aa MW: 28974.4 Da PI: 8.154

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_51314.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.1	2.4e-12	2	35	57	90
FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 tr+gCka+++vkk+++gkw+v+k+e+eHnH l+ MLOC_51314.3 2 ITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHLLS 35 68*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-10	2	35	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MITRVGCKAM IVVKKMNSGK WMVSKFEKEH NHLLSSSKLA PSTSNITSGD NAEFSAKSSA 60 PNEAEVEGHT TDSLTVLYNH LCQEAIKFAK EGSVTEEIYH VAMSALKEAS EKVSQVKSCS 120 QHGVSGSEGK HKVVQMKTMS ASQCSDEARQ KITPSRLTMF QESTSNLVLI PANLLTDSGL 180 SNSDNNRPLS CAFPASGGQG RHGPECSYLH AKNRKVDSPE KYQNSTSGRA TQGNHATYHG 240 PSEETSVAIP AIPLTLYMPV SRNSPGDSAG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_51314.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954630	2e-50	EU954630.1 Zea mays clone 1474335 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176088.1	1e-150	uncharacterized protein LOC109761678
TrEMBL	A0A287PC96	0.0	A0A287PC96_HORVV; Uncharacterized protein
STRING	MLOC_51314.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-11	FAR1 family protein