PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51079.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 302aa    MW: 34282.4 Da    PI: 6.2499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51079.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.11.3e-191393286
      trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                  W++  +++Li+++++++++lrrg+lk+++We+v++ +    +g +++ +qC++k+e+l+kry+ ++++         s +p+f+++e
  MLOC_51079.6 13 WSHGDTMHLIDVYEDRWTKLRRGQLKAHQWEDVAAEVthLCGGQRKTGTQCRHKLEKLRKRYRTEAARPVT------SLWPFFRRME 93
                  *************************************8888999********************9998885......68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-191195No hitNo description
SMARTSM005953.2E-520100IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEAARKSAPG QPWSHGDTMH LIDVYEDRWT KLRRGQLKAH QWEDVAAEVT HLCGGQRKTG  60
TQCRHKLEKL RKRYRTEAAR PVTSLWPFFR RMERLERGPV PTATNSFAAS PPHSDDDHDH  120
HHLEEDQGLE EDQEEEEDEE XXXXXXEEEE EEEQLLVARN STRSINGLVR DGGGFRGGFA  180
PRQQSPPAVT LSTAPPRKRV SYEAAAFQSK AAAAERIKAE EAPAVDSHSV AGVLRDIGEG  240
IKRLERRRME VQWEIERGWK ETEARNNQML QDAQRQLHDA LAALPPLAKK ARRDNSSSAD  300
GL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51079.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3673240.0AK367324.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158922.11e-146trihelix transcription factor ASIL1-like
TrEMBLA0A287T2R40.0A0A287T2R4_HORVV; Uncharacterized protein
STRINGMLOC_51079.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-21Trihelix family protein