PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_51079.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 302aa MW: 34282.4 Da PI: 6.2499 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.1 | 1.3e-19 | 13 | 93 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ +++Li+++++++++lrrg+lk+++We+v++ + +g +++ +qC++k+e+l+kry+ ++++ s +p+f+++e MLOC_51079.4 13 WSHGDTMHLIDVYEDRWTKLRRGQLKAHQWEDVAAEVthLCGGQRKTGTQCRHKLEKLRKRYRTEAARPVT------SLWPFFRRME 93 *************************************8888999********************9998885......68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-19 | 11 | 95 | No hit | No description |
SMART | SM00595 | 3.2E-5 | 20 | 100 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEAARKSAPG QPWSHGDTMH LIDVYEDRWT KLRRGQLKAH QWEDVAAEVT HLCGGQRKTG 60 TQCRHKLEKL RKRYRTEAAR PVTSLWPFFR RMERLERGPV PTATNSFAAS PPHSDDDHDH 120 HHLEEDQGLE EDQEEEEDEE XXXXXXEEEE EEEQLLVARN STRSINGLVR DGGGFRGGFA 180 PRQQSPPAVT LSTAPPRKRV SYEAAAFQSK AAAAERIKAE EAPAVDSHSV AGVLRDIGEG 240 IKRLERRRME VQWEIERGWK ETEARNNQML QDAQRQLHDA LAALPPLAKK ARRDNSSSAD 300 GL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_51079.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367324 | 0.0 | AK367324.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158922.1 | 1e-146 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A287T2R4 | 0.0 | A0A287T2R4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_51079.4 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 1e-21 | Trihelix family protein |