PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_50915.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 462aa    MW: 51006.2 Da    PI: 9.2598
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_50915.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.2e-14313408395
                   EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                   k+lt+sdv++ gr+vlpk+ ae++   + ++ +  l++ d++   +W++k+++  ++ks++yvl+  + eF k ++L+  D+++++  ++ ++++++
  MLOC_50915.2 313 KELTNSDVGNIGRIVLPKRDAEANlpALLERDGLILKMDDLKLpVTWNFKFRFwpNNKSRMYVLE-STGEFSKNHNLEPQDTFIIY--KSlESGKFL 406
                   889***********************777788889*****7777*******9989999999**99.9*******************..566888777 PP

                   EE CS
            B3  94 vk 95 
                   v+
  MLOC_50915.2 407 VR 408
                   76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-15308407IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-19310412IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-6311413IPR003340B3 DNA binding domain
CDDcd100178.09E-18313411No hitNo description
PfamPF023621.7E-10313408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MADANGSSSP SPQHSSGGQA VTGDFVAVPG AGPHGSFQAL LASVGGHAPP GAAPANVLPQ  60
HQYQQYHHQL FGPVGALIQA PPQPMPLRVQ PPSPALPPPH CAQSNLLLPA GRHYYQHWQP  120
PAPQIGAAAQ PQVPMGAGGF GDWTMYNVNS STFVSVACGS SSSVVRGNNG YHQSSRLCSA  180
TAWPNFSPRS PYATVYPHGM QQDHQAITYH GNNNNQQGSG FVSNFRVDQP ISPASNNHSP  240
PQLLDEATYT KRAKRNTMRT QKGRNSEDPP EMESENSDVL DHPMLDENHN LNQGQEIFTT  300
RFNCKDYYMI VWKELTNSDV GNIGRIVLPK RDAEANLPAL LERDGLILKM DDLKLPVTWN  360
FKFRFWPNNK SRMYVLESTG EFSKNHNLEP QDTFIIYKSL ESGKFLVRAE KVTGQCATLL  420
CPECKEEGRI NKQCGFTRNL NAKKKRTPRS NHKKRRGNTM KH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-303003982100B3 domain-containing transcription factor LEC2
6j9c_D1e-303003982100B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_50915.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192022.11e-156putative B3 domain-containing protein Os04g0676650 isoform X1
TrEMBLA0A287JN650.0A0A287JN65_HORVV; Uncharacterized protein
STRINGMLOC_50915.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-31B3 family protein