PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_4952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 38746.2 Da PI: 6.2497 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.5 | 1.3e-49 | 33 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s MLOC_4952.1 33 LPGYRFHPTDEELVTFYLRRKVARKSLRI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSPaaa 129 69***************************.99***************445556889**************************************9888 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g +glkk+Lv+y+g+a kg+ktdW+mhe+rl MLOC_4952.1 130 gsgsgSGVSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 167 877766677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-54 | 31 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.589 | 32 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 34 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVPEAKMEKA TSDGEVVLGG PGDEEEEEED VVLPGYRFHP TDEELVTFYL RRKVARKSLR 60 IEVIREMDIY KHDPWDLPKA STVGGEKEWY FFCLRGRKYR NSIRPNRVTG SGFWKATGID 120 RPIYSPAAAG SGSGSGVSIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPPA AAAPAANASP 180 SMQEAEVWTI CRIFRRTITY RKQQQQPWRP APAMSAADSS SNTGSFGSSE VGDEYMNCLQ 240 APAPAAPCIP QQQYVNQMDA VNGNNFFYRD TVHHQQFQGQ WNAAPAAPAP EEKPHDTLST 300 AASFHQNDHS HAVAANEFYK VEGYLEEIAR MMEVTDTAGF YDYRSYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-46 | 18 | 202 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_4952.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360432 | 0.0 | AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195561.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 8e-86 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | F2D970 | 0.0 | F2D970_HORVV; Predicted protein | ||||
STRING | MLOC_4952.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-72 | NAC domain containing protein 42 |