PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_48372.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 18722.4 Da PI: 7.9581 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 63 | 150 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 +s+v + ++v+p++ a +k+++ tlt +grsWe+++ +++++ l++GW++F+ +n L+ gD +vF+l+ g+ ++ ++v+v MLOC_48372.2 63 VCKSHVQTPFQVVVPRSLAPFLP-PKPTPATLT---WQGRSWEMRF--TGGRQVQRLEAGWRSFALDNALRLGDGCVFELVgGDgEGIVFRVQV 150 56789999999999999995553.444554454...699*******..9999999************************994444444455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-16 | 56 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-16 | 56 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-14 | 57 | 152 | No hit | No description |
SMART | SM01019 | 2.2E-6 | 59 | 154 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.449 | 59 | 154 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-12 | 62 | 148 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MHADAGGKDH GVASSTGEPS QAAISAGPQD KPDPESAKAC LEMEKTQPSI LPLLGKPYFA 60 CVVCKSHVQT PFQVVVPRSL APFLPPKPTP ATLTWQGRSW EMRFTGGRQV QRLEAGWRSF 120 ALDNALRLGD GCVFELVGGD GEGIVFRVQV LRAEIPASIR QRAGGYTPSS PIVLD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_48372.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147560.1 | 1e-111 | B3 domain-containing protein Os04g0386900-like | ||||
Swissprot | Q7XLP4 | 4e-66 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | M0WCA2 | 1e-125 | M0WCA2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_48372.1 | 1e-121 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-07 | B3 family protein |
Publications ? help Back to Top | |||
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