PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_48372.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 201aa    MW: 21630.6 Da    PI: 8.3312
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_48372.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-1489176596
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 
                     +s+v +  ++v+p++ a     +k+++ tlt    +grsWe+++  +++++   l++GW++F+ +n L+ gD +vF+l+ g+ ++  ++v+v
  MLOC_48372.1  89 VCKSHVQTPFQVVVPRSLAPFLP-PKPTPATLT---WQGRSWEMRF--TGGRQVQRLEAGWRSFALDNALRLGDGCVFELVgGDgEGIVFRVQV 176
                   56789999999999999995553.444554454...699*******..9999999************************994444444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1682178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1682179IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-1483178No hitNo description
PROSITE profilePS5086312.44985180IPR003340B3 DNA binding domain
SMARTSM010192.2E-685180IPR003340B3 DNA binding domain
PfamPF023621.3E-1188173IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAEAIPTDSS TTVTPQVYRR HKSSEESRGI SSGKDHGVAS STGEPSQAAI SAGPQDKPDP  60
ESAKACLEME KTQPSILPLL GKPYFACVVC KSHVQTPFQV VVPRSLAPFL PPKPTPATLT  120
WQGRSWEMRF TGGRQVQRLE AGWRSFALDN ALRLGDGCVF ELVGGDGEGI VFRVQVLRAE  180
IPASIRQRAG GYTPSSPIVL D
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_48372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147560.11e-126B3 domain-containing protein Os04g0386900-like
SwissprotQ7XLP43e-66Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLM0WCA11e-145M0WCA1_HORVV; Uncharacterized protein
STRINGMLOC_48372.11e-145(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]