PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_45867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 215aa MW: 24018.3 Da PI: 8.1484 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.2 | 1.9e-10 | 6 | 81 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE.EEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv.Fkldgrsefelvvkv 96 ++ k+f+ +++g+ + ++ l++++ ++++k+ ++++ g+ vl++GW +F + L+++D+++ F+++g+s+f v + MLOC_45867.1 6 IIQKEFVHRFKGE--IPGEIELQTKNKCTYKIKV-VKNQEGQLVLAAGWGRFIEKFSLQTRDSIIlFSYNGKSQF--SVII 81 5889999888766..5568***************.6888888******************998653789888888..5544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.207 | 1 | 85 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.26E-10 | 6 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-7 | 7 | 80 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-11 | 7 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.27E-8 | 9 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
NVFPQIIQKE FVHRFKGEIP GEIELQTKNK CTYKIKVVKN QEGQLVLAAG WGRFIEKFSL 60 QTRDSIILFS YNGKSQFSVI ILDQLGREKA SSVVNPFPPR ALERHTNCAE TVSQHPSDGH 120 PLPVERLVQS TDAAANILHR PTQIPETADC SLPLMIMPST AHFDVHHQQQ AMLMQPPLNH 180 SSSSEASAGE GDGSFSSHDH VQNALGFVRV VRRKY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_45867.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-128 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014750916.1 | 3e-31 | putative B3 domain-containing protein Os08g0325100 | ||||
TrEMBL | A0A287V382 | 1e-130 | A0A287V382_HORVV; Uncharacterized protein | ||||
STRING | MLOC_45867.1 | 1e-160 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12482 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-07 | B3 family protein |