PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_45055.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 195aa    MW: 21004.2 Da    PI: 5.2008
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_45055.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY44.53e-142441958
                  SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY 19 efprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                  ++ r+YYrCt++   gC ++k+v+r++edp++++++Y+geH++
  MLOC_45055.3  2 QHCRGYYRCTHRksqGCAATKQVQRADEDPTLFDVIYHGEHTC 44
                  578********98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.759142IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-13244IPR003657WRKY domain
SMARTSM007741.5E-11246IPR003657WRKY domain
PfamPF031064.3E-14244IPR003657WRKY domain
SuperFamilySSF1182906.15E-12344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQHCRGYYRC THRKSQGCAA TKQVQRADED PTLFDVIYHG EHTCIHKTVA ALAAGHAEEN  60
PGASRLLQNL STSLTVNTEG LTATAGHQGC STTTSFCFSS QAARVLAPQE HYPFSMPSTP  120
ENCFGQGASL STSLEPSPVT SDSNRFSMTP FQAEWRARSE LDEVVSALVA AGAPAMEETP  180
FSLDGFEFDV SGFFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_45055.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770660.0AK377066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200629.11e-109WRKY transcription factor WRKY62-like
TrEMBLM0W8U21e-143M0W8U2_HORVV; Uncharacterized protein
STRINGMLOC_45055.11e-139(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-16WRKY family protein