PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_44423.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 852aa MW: 97202 Da PI: 6.0468 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.7 | 1.9e-18 | 238 | 322 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA ++GF v++ +++k+ + ++ C+++ k + ++ +++r++++ ++t+C+ak++v + +g+w+ t +++eHnH+l+p MLOC_44423.3 238 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKVVVALI-KGQWVFTAVQNEHNHPLTP 322 69*******************9......4677******9988755543799999******************.9***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-17 | 238 | 322 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-26 | 444 | 536 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.716 | 726 | 763 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MEEYLATYTA KDPATPAQPA VQTASELPAR AAGGHAQQAP GAAALPASSR GAVKSNSSSV 60 KTPGSSSNKR VIYIVDGDDG SHVPTLRQVQ VYGEEGSKGY EMTPAPASNV VKQPRLDAGK 120 QPVRRPRIQL ISNMHQGQST ELMDDDEEAS MALAVKLERN ASYVDRSLQL ETAEEFDVME 180 IDDLSSDDTG SESDSDSGSG SESEKEEGKF FYPGPEELGT VKAPQVGMKF PTLEDAHEYY 240 NTYALQTGFV VVRGRNYKRQ RFQLDCNRNR KVKLVEDLNL KRKRKKNVIE KTNCQAKVVV 300 ALIKGQWVFT AVQNEHNHPL TPSRSFTRFL TSQKHMSVEE RSFSRVLQQS RVPPGEILKI 360 LRRMGSFFRE LPPKEKQALI LQSAEQWRKA NLDVEKTLNH FEELQLQDPC FLYTVQKDAD 420 GALRSVFWTD ARSRMDYEVF GDFVSFDTTC STNRHHMPFV PITGMNNRGR TIVLGCALLQ 480 DRKVETYKWM LQTFLKEMGG HMMPRSVITS QDEAMAKAIA EVMPQARHRF CRWDRNAQEK 540 MASFVAARVN MKAELDSLVD NSLTETEFEE GWSALIQRHD ASENEYLQFL WEMRKTWAPV 600 YFMQDFFPFV VSARGSQGAF SLFKEKVLLP KDKIENLIEK YEEMQDNIKK TDEEDAQQSA 660 TEPKCFSLQP IERHASRVYT RQIFLKVQKE LLHSTAFKVR EIEIGTLYRL EKASNYENPE 720 YDRDFFEVWV EPGVNDTYTC QCAKFARDGI LCCHVFRLFT QFGIDEIPEK YIMARWTDGC 780 REEQLERCEE GRMVVAAVRR EEDATRYAAM MSKAAGIGRE ICGDGAKCEA FMLELDRIRE 840 KMATMTMAND NF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 286 | LKRKRKKN |
2 | 281 | 285 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_44423.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146870.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A287V6L0 | 0.0 | A0A287V6L0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_44423.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 5e-74 | FAR1-related sequence 3 |