PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44423.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 852aa    MW: 97202 Da    PI: 6.0468
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44423.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.71.9e-18238322191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   ++Yn+YA ++GF v++ +++k+       + ++ C+++ k +  ++   +++r++++ ++t+C+ak++v +  +g+w+ t +++eHnH+l+p
  MLOC_44423.2 238 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKVVVALI-KGQWVFTAVQNEHNHPLTP 322
                   69*******************9......4677******9988755543799999******************.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-17238322IPR004330FAR1 DNA binding domain
PfamPF105512.0E-26444536IPR018289MULE transposase domain
PROSITE profilePS509668.716726763IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MEEYLATYTA KDPATPAQPA VQTASELPAR AAGGHAQQAP GAAALPASSR GAVKSNSSSV  60
KTPGSSSNKR VIYIVDGDDG SHVPTLRQVQ VYGEEGSKGY EMTPAPASNV VKQPRLDAGK  120
QPVRRPRIQL ISNMHQGQST ELMDDDEEAS MALAVKLERN ASYVDRSLQL ETAEEFDVME  180
IDDLSSDDTG SESDSDSGSG SESEKEEGKF FYPGPEELGT VKAPQVGMKF PTLEDAHEYY  240
NTYALQTGFV VVRGRNYKRQ RFQLDCNRNR KVKLVEDLNL KRKRKKNVIE KTNCQAKVVV  300
ALIKGQWVFT AVQNEHNHPL TPSRSFTRFL TSQKHMSVEE RSFSRVLQQS RVPPGEILKI  360
LRRMGSFFRE LPPKEKQALI LQSAEQWRKA NLDVEKTLNH FEELQLQDPC FLYTVQKDAD  420
GALRSVFWTD ARSRMDYEVF GDFVSFDTTC STNRHHMPFV PITGMNNRGR TIVLGCALLQ  480
DRKVETYKWM LQTFLKEMGG HMMPRSVITS QDEAMAKAIA EVMPQARHRF CRWDRNAQEK  540
MASFVAARVN MKAELDSLVD NSLTETEFEE GWSALIQRHD ASENEYLQFL WEMRKTWAPV  600
YFMQDFFPFV VSARGSQGAF SLFKEKVLLP KDKIENLIEK YEEMQDNIKK TDEEDAQQSA  660
TEPKCFSLQP IERHASRVYT RQIFLKVQKE LLHSTAFKVR EIEIGTLYRL EKASNYENPE  720
YDRDFFEVWV EPGVNDTYTC QCAKFARDGI LCCHVFRLFT QFGIDEIPEK YIMARWTDGC  780
REEQLERCEE GRMVVAAVRR EEDATRYAAM MSKAAGIGRE ICGDGAKCEA FMLELDRIRE  840
KMATMTMAND NF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279286LKRKRKKN
2281285RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44423.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146870.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A287V6L00.0A0A287V6L0_HORVV; Uncharacterized protein
STRINGMLOC_44423.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.25e-74FAR1-related sequence 3