PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44423.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 777aa    MW: 89753.3 Da    PI: 6.3107
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44423.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.91.7e-18163247191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   ++Yn+YA ++GF v++ +++k+       + ++ C+++ k +  ++   +++r++++ ++t+C+ak++v +  +g+w+ t +++eHnH+l+p
  MLOC_44423.1 163 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKVVVALI-KGQWVFTAVQNEHNHPLTP 247
                   69*******************9......4677******9988755543799999******************.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-17163247IPR004330FAR1 DNA binding domain
PfamPF105511.7E-26369461IPR018289MULE transposase domain
PROSITE profilePS509668.716651688IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MGMMAPMCPP CAKCRCMEKR GSKGYEMTPA PASNVVKQPR LDAGKQPVRR PRIQLISNMH  60
QGQSTELMDD DEEASMALAV KLERNASYVD RSLQLETAEE FDVMEIDDLS SDDTGSESDS  120
DSGSGSESEK EEGKFFYPGP EELGTVKAPQ VGMKFPTLED AHEYYNTYAL QTGFVVVRGR  180
NYKRQRFQLD CNRNRKVKLV EDLNLKRKRK KNVIEKTNCQ AKVVVALIKG QWVFTAVQNE  240
HNHPLTPSRS FTRFLTSQKH MSVEERSFSR VLQQSRVPPG EILKILRRMG SFFRELPPKE  300
KQALILQSAE QWRKANLDVE KTLNHFEELQ LQDPCFLYTV QKDADGALRS VFWTDARSRM  360
DYEVFGDFVS FDTTCSTNRH HMPFVPITGM NNRGRTIVLG CALLQDRKVE TYKWMLQTFL  420
KEMGGHMMPR SVITSQDEAM AKAIAEVMPQ ARHRFCRWDR NAQEKMASFV AARVNMKAEL  480
DSLVDNSLTE TEFEEGWSAL IQRHDASENE YLQFLWEMRK TWAPVYFMQD FFPFVVSARG  540
SQGAFSLFKE KVLLPKDKIE NLIEKYEEMQ DNIKKTDEED AQQSATEPKC FSLQPIERHA  600
SRVYTRQIFL KVQKELLHST AFKVREIEIG TLYRLEKASN YENPEYDRDF FEVWVEPGVN  660
DTYTCQCAKF ARDGILCCHV FRLFTQFGID EIPEKYIMAR WTDGCREEQL ERCEEGRMVV  720
AAVRREEDAT RYAAMMSKAA GIGREICGDG AKCEAFMLEL DRIREKMATM TMANDNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211LKRKRKKN
2206210RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44423.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146870.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLM0W7730.0M0W773_HORVV; Uncharacterized protein
STRINGMLOC_44423.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-74FAR1-related sequence 3