PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_4407.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 102aa MW: 11298 Da PI: 8.2042 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri+n++nrqvtfskRr g++KKA EL +LCda+ a+i+fsstg+ly+++s MLOC_4407.3 9 ERIDNTTNRQVTFSKRRGGLMKKARELAILCDADLALIVFSSTGRLYDFAS 59 69***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.371 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.28E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 5.89E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MGRGKIAIER IDNTTNRQVT FSKRRGGLMK KARELAILCD ADLALIVFSS TGRLYDFASS 60 SGMEAILERY QEAKEEQCGV LNPTSEAKVC NYVCIVAFSC HT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-22 | 1 | 75 | 1 | 74 | MEF2C |
5f28_B | 4e-22 | 1 | 75 | 1 | 74 | MEF2C |
5f28_C | 4e-22 | 1 | 75 | 1 | 74 | MEF2C |
5f28_D | 4e-22 | 1 | 75 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_4407.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM502901 | 1e-108 | AM502901.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31A (WM31A gene). | |||
GenBank | AM502903 | 1e-108 | AM502903.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM31C (WM31C gene). | |||
GenBank | DQ512329 | 1e-108 | DQ512329.1 Triticum aestivum MADS-box transcription factor TaAGL6 (AGL6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153469.1 | 7e-58 | MADS-box transcription factor 25-like | ||||
Swissprot | Q84NC5 | 7e-46 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A453QQX9 | 1e-64 | A0A453QQX9_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_4407.1 | 2e-58 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 5e-31 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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