PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_43730.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 597aa MW: 67201.4 Da PI: 6.2874

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_43730.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	322.3	9.6e-99	219	588	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+ v + d + a +lL++++++asp+gd++qRla f+e+L+arl++++s++y l+++ ts ++++ a++lf ++ + k+++l a MLOC_43730.1 219 HTLLIHCAKSVMD-DRRSAGELLKEIKQHASPTGDATQRLAYWFAEGLEARLTGTGSQVYGLLTAECTS---RVRHMEAYQLFMSTCCFRKVAFLFA 311 679****9987.8999**************************************999998888...8999***************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N+aI +a+ g +r+Hi+D+++ G+QWp Ll+ LasR++gpp++RiT ++ p++g ++ +e++g+rLa++A+elgvpf++++ ++ +++++ +e+ MLOC_43730.1 312 NKAIFNAAVGRSRLHIVDYGLHCGFQWPELLRWLASRDGGPPEVRITHIELPQPGvyLEKHMEQIGNRLADIAQELGVPFKYRA-IMAQWQTICVED 407 ***************************************************9999*********************.6999**** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 L+++p+EalaVn +++ +l+desv +++ +rd+vL + +++P+v+v + + ++ ++ Fl rf eal y+sa+fd+l+a++pres+ r +Er MLOC_43730.1 408 LNMEPDEALAVNDQFNFRTLMDESVVIANlnPRDAVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREALFYHSAVFDMLDATMPRESKLRLALERD 503 **********************999999*******************99.789******************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++g+ + n+va eg++r+er et+++W+ r ++aG++++pl+ +++k a+ ++ + + + ++e++++l++gWk+r L++ S W MLOC_43730.1 504 VFGWIVLNAVAYEGEDRVERGETYKHWQIRNQRAGLRQLPLNRETVKMARDMVMGDYHKDFDIDEDHQWLLQGWKGRILYAHSTW 588 **********************************************9998888788*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.369	192	569	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-96	219	588	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MASTPVFPVF PDLPLMAHDD NHRFAVQDHL ALPYIAQILM EEEDDVDEDN PALLKAQWPF 60 AQILSSSMHA STLMADQGGA LAIDVHSPNS AIDVNSPSSA IFKFKGVDEV RSLLLLPNGD 120 YNTHMFSTAF VRGMEEANKF LPTNCELTTT GGHDLPKEKS GRGRKGRHGE VDADISRTSR 180 LVEAGAGEVL DQMLIAMSNE TGNRNKKGRK SKARVVDLHT LLIHCAKSVM DDRRSAGELL 240 KEIKQHASPT GDATQRLAYW FAEGLEARLT GTGSQVYGLL TAECTSRVRH MEAYQLFMST 300 CCFRKVAFLF ANKAIFNAAV GRSRLHIVDY GLHCGFQWPE LLRWLASRDG GPPEVRITHI 360 ELPQPGVYLE KHMEQIGNRL ADIAQELGVP FKYRAIMAQW QTICVEDLNM EPDEALAVND 420 QFNFRTLMDE SVVIANLNPR DAVLGNISKM KPDVFVQSTV NGSYGTFFLS RFREALFYHS 480 AVFDMLDATM PRESKLRLAL ERDVFGWIVL NAVAYEGEDR VERGETYKHW QIRNQRAGLR 540 QLPLNRETVK MARDMVMGDY HKDFDIDEDH QWLLQGWKGR ILYAHSTWVA EGASSHC

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MASTPVFPVF PDLPLMAHDD NHRFAVQDHL ALPYIAQILM EEEDDVDEDN PALLKAQWPF  60
AQILSSSMHA STLMADQGGA LAIDVHSPNS AIDVNSPSSA IFKFKGVDEV RSLLLLPNGD  120
YNTHMFSTAF VRGMEEANKF LPTNCELTTT GGHDLPKEKS GRGRKGRHGE VDADISRTSR  180
LVEAGAGEVL DQMLIAMSNE TGNRNKKGRK SKARVVDLHT LLIHCAKSVM DDRRSAGELL  240
KEIKQHASPT GDATQRLAYW FAEGLEARLT GTGSQVYGLL TAECTSRVRH MEAYQLFMST  300
CCFRKVAFLF ANKAIFNAAV GRSRLHIVDY GLHCGFQWPE LLRWLASRDG GPPEVRITHI  360
ELPQPGVYLE KHMEQIGNRL ADIAQELGVP FKYRAIMAQW QTICVEDLNM EPDEALAVND  420
QFNFRTLMDE SVVIANLNPR DAVLGNISKM KPDVFVQSTV NGSYGTFFLS RFREALFYHS  480
AVFDMLDATM PRESKLRLAL ERDVFGWIVL NAVAYEGEDR VERGETYKHW QIRNQRAGLR  540
QLPLNRETVK MARDMVMGDY HKDFDIDEDH QWLLQGWKGR ILYAHSTWVA EGASSHC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-42	222	588	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_43730.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172172.1	0.0	scarecrow-like protein 33
TrEMBL	M0W4V8	0.0	M0W4V8_HORVV; Uncharacterized protein
STRING	MLOC_43730.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-128	GRAS family protein