PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_42759.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 551aa    MW: 58597.3 Da    PI: 10.197
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_42759.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.71e-1275134362
                   XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                   + +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +   +L ++++ +  e a+l+++
  MLOC_42759.1  75 DTRRAARLIRNRESAQLSRQRKKRYVEELEEKVKSMNSVINDLNSKISFIVAENATLRQQ 134
                   6799***********************************99******9999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.4E-1373137IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.03675135IPR004827Basic-leucine zipper domain
PfamPF001704.7E-1275135IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.82E-1277135No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-1577135No hitNo description
CDDcd147041.55E-1978129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
AVGGGSCEVK HEDSDEGKSS GAPNWSLKRK PASPAPSSEA AKCRRSGDGE VSPSASASRA  60
AADSDEGGPV GEGEDTRRAA RLIRNRESAQ LSRQRKKRYV EELEEKVKSM NSVINDLNSK  120
ISFIVAENAT LRQQLGNGGG NCPPPGMYPP GAMPGMHFPW VPGYALRPHG SHVPLVPIPR  180
LKTQQPVAAT KATKKPDNKK AVDSKSKTKT KTKKVASVSL LSLMLVMLLF GAFVPGFNHN  240
FGLSGGSDSA MFRNFGQPHD RVVSVNNQGK VPKGGPNNSD MTGVDSGMMM GTDDSADQKH  300
QPVLNSSETL PALLYVPRNG KHVKINGNLI IHSVLASEKA VAHGTSKQNS GQSGIDHKET  360
STAIARHLSL PGNNMNPQEK SPVDGPLPQW FREGMAGPIL NSGMCSEVFQ FDISAATNSG  420
GIIPASPAVN SSSVNATRKI PTPAPAYYGK LKNRRIMYNE AAIPLTGKTV NNTEPFNRTS  480
ESSKLPDKKP ASSVVVSVLA DPREAGDGDS DPRMTPKSLS RIFVVVLLDG VRYVTYSCTL  540
PFKSASPHLV N
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_42759.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3626280.0AK362628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008O22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152277.10.0bZIP transcription factor 39-like
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLA0A287FY400.0A0A287FY40_HORVV; Uncharacterized protein
STRINGMLOC_42759.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-83bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]