PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_4235.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 815aa MW: 92030.4 Da PI: 6.1469 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.5 | 1.9e-17 | 73 | 157 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF v+++ks+ + + g + + +vC+++g+ +++ + r++ +t+C+a+++ +++ dg ++t+++l+HnH+l+p MLOC_4235.5 73 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKDDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVSLDHNHPLNP 157 6*****************9998.6777****************9999.....999*********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-15 | 73 | 157 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.6E-25 | 260 | 351 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.371 | 539 | 575 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0038 | 550 | 577 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.6E-4 | 552 | 571 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MADLVPGEGE LELAFGGNQD DDDAEDASPG SKELAAMVEA AAAASVELDA AADRDDRTPR 60 DGMVFKSYEE VLNFYKRYAL RTGFGVCVKK SSFTKAGLCR RLLLVCNRWG NGKDDACYQA 120 RPTAKTNCQA TVVARLWGDG LLHLTDVSLD HNHPLNPSAA RFLRCYKTLP SGMSKDLVVR 180 AARGECSTSD VEAPTMFDDW GRLKIREGDV QAINCFFAEM QAKQPNFFYV MDFYVEGHLR 240 SVLWADSRSR EAYQYFSDAI WVDTTCLRSK FNVPLVLFLG VNHHGQLVLL GCGLLSDEST 300 ESFLWLFKAW LTCMKGRLPG AMITDESVAI KAAVREAFPK TRHRISDWHI ETSIAEKLGE 360 LPEYESIKVQ LEAVIYGSLK EDQFETRWKN LINRFGLQDN QWIIFLYENR HLWVPSFLKD 420 AFWAGLSVNH RESPGAFFDG SVSHETTLVS FLSNYMILVQ DKYKMEQQDD FESLTSGRVL 480 VSKFPMEEQI SKLYTLNMFV KFQDELNSTL QCQVQQVSPS SFVVMDLAER GTGLVTRKYE 540 VVHCMETNRM ECNCGLFQLS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS DFKQLHALDN 600 PLKDPLLSSN HVERYDHISL QCLRLVEIGM VSDDKYQHAL KLINDMKRTL LDDNLCRELE 660 QKISPPERTT VMNGDGHAQP GSSEGGPAKK RRGRPSKKSK EISAESVSNQ CGNKESLLVS 720 SDVSQKGALH SSSTASNLGT HVRAHGIDDL MEEVNANEVS FESRYGVQSS HPNHYGDELH 780 PGHTLQVFLF SYMTTFSFAY FLPFVTKENL LLVSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_4235.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178274.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | M0W344 | 0.0 | M0W344_HORVV; Uncharacterized protein | ||||
STRING | MLOC_4235.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-112 | FAR1-related sequence 6 |