PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_4235.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 820aa MW: 92603.7 Da PI: 6.1273

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_4235.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	73	157	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA ++GF v+++ks+ + + g + + +vC+++g+ +++ + r++ +t+C+a+++ +++ dg ++t+++l+HnH+l+p MLOC_4235.4 73 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKDDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVSLDHNHPLNP 157 6***************9998.6777************9999.....999*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-15	73	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-25	260	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.371	539	575	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0038	550	577	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.7E-4	552	571	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MADLVPGEGE LELAFGGNQD DDDAEDASPG SKELAAMVEA AAAASVELDA AADRDDRTPR 60 DGMVFKSYEE VLNFYKRYAL RTGFGVCVKK SSFTKAGLCR RLLLVCNRWG NGKDDACYQA 120 RPTAKTNCQA TVVARLWGDG LLHLTDVSLD HNHPLNPSAA RFLRCYKTLP SGMSKDLVVR 180 AARGECSTSD VEAPTMFDDW GRLKIREGDV QAINCFFAEM QAKQPNFFYV MDFYVEGHLR 240 SVLWADSRSR EAYQYFSDAI WVDTTCLRSK FNVPLVLFLG VNHHGQLVLL GCGLLSDEST 300 ESFLWLFKAW LTCMKGRLPG AMITDESVAI KAAVREAFPK TRHRISDWHI ETSIAEKLGE 360 LPEYESIKVQ LEAVIYGSLK EDQFETRWKN LINRFGLQDN QWIIFLYENR HLWVPSFLKD 420 AFWAGLSVNH RESPGAFFDG SVSHETTLVS FLSNYMILVQ DKYKMEQQDD FESLTSGRVL 480 VSKFPMEEQI SKLYTLNMFV KFQDELNSTL QCQVQQVSPS SFVVMDLAER GTGLVTRKYE 540 VVHCMETNRM ECNCGLFQLS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS DFKQLHALDN 600 PLKDPLLSSN HVERYDHISL QCLRLVEIGM VSDDKYQHAL KLINDMKRTL LDDNLCRELE 660 QKISPPERTT VMNGDGHAQP GSSEGGPAKK RRGRPSKKSK EISAESVSNQ CGNKESLLVS 720 SDVSQKGALH SSSTASNLGT HVRAHGIDDL MEEVNANEVS FESRYGVQSS HPNHYGDELH 780 PGHTLQFGQH MPSAEQSRGV EWVYPTIYQD DQVPYGRRTS

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MADLVPGEGE LELAFGGNQD DDDAEDASPG SKELAAMVEA AAAASVELDA AADRDDRTPR  60
DGMVFKSYEE VLNFYKRYAL RTGFGVCVKK SSFTKAGLCR RLLLVCNRWG NGKDDACYQA  120
RPTAKTNCQA TVVARLWGDG LLHLTDVSLD HNHPLNPSAA RFLRCYKTLP SGMSKDLVVR  180
AARGECSTSD VEAPTMFDDW GRLKIREGDV QAINCFFAEM QAKQPNFFYV MDFYVEGHLR  240
SVLWADSRSR EAYQYFSDAI WVDTTCLRSK FNVPLVLFLG VNHHGQLVLL GCGLLSDEST  300
ESFLWLFKAW LTCMKGRLPG AMITDESVAI KAAVREAFPK TRHRISDWHI ETSIAEKLGE  360
LPEYESIKVQ LEAVIYGSLK EDQFETRWKN LINRFGLQDN QWIIFLYENR HLWVPSFLKD  420
AFWAGLSVNH RESPGAFFDG SVSHETTLVS FLSNYMILVQ DKYKMEQQDD FESLTSGRVL  480
VSKFPMEEQI SKLYTLNMFV KFQDELNSTL QCQVQQVSPS SFVVMDLAER GTGLVTRKYE  540
VVHCMETNRM ECNCGLFQLS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS DFKQLHALDN  600
PLKDPLLSSN HVERYDHISL QCLRLVEIGM VSDDKYQHAL KLINDMKRTL LDDNLCRELE  660
QKISPPERTT VMNGDGHAQP GSSEGGPAKK RRGRPSKKSK EISAESVSNQ CGNKESLLVS  720
SDVSQKGALH SSSTASNLGT HVRAHGIDDL MEEVNANEVS FESRYGVQSS HPNHYGDELH  780
PGHTLQFGQH MPSAEQSRGV EWVYPTIYQD DQVPYGRRTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_4235.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178274.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	M0W342	0.0	M0W342_HORVV; Uncharacterized protein
STRING	MLOC_4235.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-112	FAR1-related sequence 6