PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_3915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23343.4 Da PI: 9.9796 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.3e-10 | 27 | 77 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 a +e+Er RR++++ ++L +l+Pk + + K+s + L +A YIk+L MLOC_3915.1 27 ARKEVERERRQHMKVLCAKLVSLIPKeHF-SNPDKMSQLDRLDEAASYIKKL 77 779***********************776.55589***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-12 | 17 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.928 | 23 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.12E-6 | 24 | 81 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-13 | 27 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-7 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-6 | 29 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEVQAHEATG RRRGRTSGGT TAARVVARKE VERERRQHMK VLCAKLVSLI PKEHFSNPDK 60 MSQLDRLDEA ASYIKKLKER VDELQHRRSS MQAMAAARGT SRTSTHTTTP TTSGGPGSPE 120 GEKHWEASVP VVEVRQHSDT SMDVVLVCST QRPIMLHEVI TILEEEGADV VNANQSVAGH 180 NIFYTIHTQA FSPRIGIDVS SVSGRLRALV R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_3915.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190842.1 | 1e-100 | uncharacterized protein LOC109776589 | ||||
TrEMBL | M0VZZ8 | 1e-153 | M0VZZ8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_3915.1 | 1e-154 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 5e-12 | bHLH family protein |