PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3855.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 383aa    MW: 44107.9 Da    PI: 7.6126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3855.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-057092123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC  Cg +F  + +Lk+H+++H
  MLOC_3855.1 70 HKCDECGACFQKPAHLKQHMQSH 92
                 79*******************99 PP
2zf-C2H2224.2e-0798122123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + Cp  dC+ s+ rk++L+rH+ tH
  MLOC_3855.1  98 FACPleDCPFSYIRKDHLNRHMLTH 122
                  78**********************9 PP
3zf-C2H217.11.6e-05127152123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  ++Cp   Cgk+Fs k n +rH +  H
  MLOC_3855.1 127 FTCPleGCGKRFSIKANIQRHVKEmH 152
                  89********************9988 PP
4zf-C2H216.72.1e-05171193323
                  ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                  C+   C+k F+ +s+Lk+H  +H
  MLOC_3855.1 171 CQeeGCKKAFKYPSQLKKHEEMH 193
                  77779**************9988 PP
5zf-C2H215.74.4e-05260284223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+   C  +Fs+ksnL++H++  H
  MLOC_3855.1 260 KCTfdGCECTFSNKSNLNKHMKAcH 284
                  799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355192447IPR015880Zinc finger, C2H2-like
SMARTSM003550.00687092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.3187097IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-57089IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-1182124No hitNo description
Gene3DG3DSA:3.30.160.606.0E-1390124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.4E-498122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.51598127IPR007087Zinc finger, C2H2
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-9108159No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6125149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.217127157IPR007087Zinc finger, C2H2
SMARTSM003554.0E-4127152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349169194IPR007087Zinc finger, C2H2
SMARTSM003550.032169193IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6171193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM003553.5201226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
SMARTSM0035519229250IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.5E-7244281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.41E-9244301No hitNo description
SMARTSM003550.0015259284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115259289IPR007087Zinc finger, C2H2
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-4283312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035527290316IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.517290316IPR007087Zinc finger, C2H2
PROSITE patternPS000280292316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSSGDGINGD ERSEETHSKD IRRYKCEFCT VVRSKMYLIR AHMVAQHKDE LDASEIYNSD  60
GEKVVPEVEH KCDECGACFQ KPAHLKQHMQ SHSKERSFAC PLEDCPFSYI RKDHLNRHML  120
THEGKLFTCP LEGCGKRFSI KANIQRHVKE MHEDEHECKM DDAKSNQQVI CQEEGCKKAF  180
KYPSQLKKHE EMHAKLDYVE VVCCEPGCLK TFSNAGCLKA HNQSCHLYTQ CDICGEKHLK  240
KNIKRHLRAH AEVHSTERLK CTFDGCECTF SNKSNLNKHM KACHDQVRPF ECRVVGCGKT  300
FHYKHVRDNH EKSSWHVYVE GDYEEMDEQL RSRPRGGRKR AAVTVETLTR KRVTIPSEAS  360
SLDDGAGYMR WLLSGGDDSN HAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-16612842188PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-16612842188PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3855.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181263.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-124TF3A_ARATH; Transcription factor IIIA
TrEMBLM0VYG10.0M0VYG1_HORVV; Uncharacterized protein
STRINGMLOC_3855.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-126transcription factor IIIA