PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_3853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 20805.4 Da PI: 8.3724 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 58 | 1.9e-18 | 124 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S....SSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa....edpkvveitYegeHnhe 59 +Dgy+WrKYGqK + + fpr YYrC ++ +Cp++k v++++ d+++ +++Y eH+++ MLOC_3853.1 124 SDGYQWRKYGQKRIMRTSFPRCYYRCCYHrerSCPATKLVQQQQphgdGDQTMYNVIYVHEHTCD 188 7**************************998999********9863333588999********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-21 | 113 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-18 | 117 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.847 | 118 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-24 | 123 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-21 | 125 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MQAQSRLIMN PNVGVAGYDD SAAADEQHKA VLRELTHGHE LTAHLQAEAL RALRGQGQAE 60 ATAALILQEV SRAFSVCISI MGGSAPAAPP PDATPVVATG AASARRPRDD GVPRKVTVTS 120 SPYSDGYQWR KYGQKRIMRT SFPRCYYRCC YHRERSCPAT KLVQQQQPHG DGDQTMYNVI 180 YVHEHTCDH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_3853.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ806390 | 0.0 | JQ806390.1 Hordeum vulgare WRKY transcript factor 49 (WRKY49) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186012.1 | 1e-106 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A287LWL9 | 1e-139 | A0A287LWL9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_3853.1 | 1e-139 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12538 | 28 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 4e-11 | WRKY DNA-binding protein 54 |