PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37768.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 504aa    MW: 56939 Da    PI: 7.8744
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37768.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1624111699
                   ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   t+ d ++ + +v+p +f++ +  k   s t+ le ++g++++v++  + ++++++l++GW  Fv+an++ e D+++F++ g+ +f  +v vf++
  MLOC_37768.2  24 THMDRNSGHSMVMPESFVNCFAWK--LSGTIELEAPNGNVYDVRI--TERRNKTLLRSGWGAFVDANHIVESDSLMFRHRGNCRF--KVVVFDS 111
                   5668899999********444433..5669***************..999999*************************9998888..7877775 PP
2B335.71.5e-11233322596
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                   +t+++v     lv+pk++a +h   k+++++l+l d ++++W  +++++  +g++ l+    +F+++n+L egD++vF+ + + ++++++v+v
  MLOC_37768.2 233 MTKPSVKPYPDLVIPKDYALAHFPRKNQTIKLQLPD-QSKKWYCEFRVKSDGGHFNLK--ECGFARDNHLLEGDMCVFHPMMNrKGRTFKVMV 322
                   67778888888***********76655655555555.669***999666666667777..679****************66443777777665 PP
3B343.75e-144095011099
                   HHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS
            B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 
                   v++++ + ++ +fa ++       e+s  l+l+   ++++W  ++  r k+g++ +++GW +F+++n+L+egD+++F+l+++    ++++v ++r+
  MLOC_37768.2 409 VMTRSSILVSLSFAIKYsatY-LREGSGSLVLQVeGKSQVWHDEM--REKGGAMRIRAGWTSFASDNNLREGDICLFELMKNegGPKKMMVYIIRR 501
                   556666778889999998852.33455567777735669******..*******************************995536777888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2016114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-1918114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40719112IPR003340B3 DNA binding domain
CDDcd100172.52E-1820110No hitNo description
SMARTSM010191.3E-823112IPR003340B3 DNA binding domain
PfamPF023625.3E-1523110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-12220322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-13222322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-13227323No hitNo description
SMARTSM010190.0042229329IPR003340B3 DNA binding domain
PROSITE profilePS508638.177229326IPR003340B3 DNA binding domain
PfamPF023624.1E-10232322IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-16399504IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871400502IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-16400502IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-13404500No hitNo description
SMARTSM010191.1E-6406502IPR003340B3 DNA binding domain
PfamPF023621.3E-11409501IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSNSCECCKR YWTHLHGKVK CFFTHMDRNS GHSMVMPESF VNCFAWKLSG TIELEAPNGN  60
VYDVRITERR NKTLLRSGWG AFVDANHIVE SDSLMFRHRG NCRFKVVVFD SSGCEKVVSC  120
ARRQGNTNDQ APSTNSTDIL TSFTDGNTHS SARGRSDDYC RKRAKKDAIA YPSEGSSEDS  180
PYEHQSSESD DQMLPTPVYV LSGKCYVTDE DEASIIALAQ EIQPEMPLLV VMMTKPSVKP  240
YPDLVIPKDY ALAHFPRKNQ TIKLQLPDQS KKWYCEFRVK SDGGHFNLKE CGFARDNHLL  300
EGDMCVFHPM MNRKGRTFKV MVHLLCKASI DHTSSKNGLT SKKNVPTLCI KEDTNEGEEI  360
PSLGHEEHGI NDEEPYMMPR GTCLTRLQKK KVLGKVEAIG SDLHIYIAVM TRSSILVSLS  420
FAIKYSATYL REGSGSLVLQ VEGKSQVWHD EMREKGGAMR IRAGWTSFAS DNNLREGDIC  480
LFELMKNEGG PKKMMVYIIR RELC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37768.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLM0VW090.0M0VW09_HORVV; Uncharacterized protein
STRINGMLOC_37768.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-16B3 family protein