PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37768.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 502aa    MW: 56778.8 Da    PI: 7.8744
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37768.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-1624111699
                   ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   t+ d ++ + +v+p +f++ +  k   s t+ le ++g++++v++  + ++++++l++GW  Fv+an++ e D+++F++ g+ +f  +v vf++
  MLOC_37768.1  24 THMDRNSGHSMVMPESFVNCFAWK--LSGTIELEAPNGNVYDVRI--TERRNKTLLRSGWGAFVDANHIVESDSLMFRHRGNCRF--KVVVFDS 111
                   5668899999********444433..5669***************..999999*************************9998888..7877775 PP
2B335.71.5e-11231320596
                   -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
            B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                   +t+++v     lv+pk++a +h   k+++++l+l d ++++W  +++++  +g++ l+    +F+++n+L egD++vF+ + + ++++++v+v
  MLOC_37768.1 231 MTKPSVKPYPDLVIPKDYALAHFPRKNQTIKLQLPD-QSKKWYCEFRVKSDGGHFNLK--ECGFARDNHLLEGDMCVFHPMMNrKGRTFKVMV 320
                   67778888888***********76655655555555.669***999666666667777..679****************66443777777665 PP
3B343.75e-144074991099
                   HHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS
            B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 
                   v++++ + ++ +fa ++       e+s  l+l+   ++++W  ++  r k+g++ +++GW +F+++n+L+egD+++F+l+++    ++++v ++r+
  MLOC_37768.1 407 VMTRSSILVSLSFAIKYsatY-LREGSGSLVLQVeGKSQVWHDEM--REKGGAMRIRAGWTSFASDNNLREGDICLFELMKNegGPKKMMVYIIRR 499
                   556666778889999998852.33455567777735669******..*******************************995536777888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2016114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-1918114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40719112IPR003340B3 DNA binding domain
CDDcd100172.45E-1820110No hitNo description
PfamPF023625.2E-1523110IPR003340B3 DNA binding domain
SMARTSM010191.3E-823112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-12218320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-13220320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-13225321No hitNo description
PROSITE profilePS508638.177227324IPR003340B3 DNA binding domain
SMARTSM010190.0042227327IPR003340B3 DNA binding domain
PfamPF023624.0E-10230320IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-16397502IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-16398500IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871398500IPR003340B3 DNA binding domain
CDDcd100178.34E-13402498No hitNo description
SMARTSM010191.1E-6404500IPR003340B3 DNA binding domain
PfamPF023621.3E-11407499IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSNSCECCKR YWTHLHGKVK CFFTHMDRNS GHSMVMPESF VNCFAWKLSG TIELEAPNGN  60
VYDVRITERR NKTLLRSGWG AFVDANHIVE SDSLMFRHRG NCRFKVVVFD SSGCEKVVSC  120
ARRQGNTNDQ APSTNSTDIL TSFTDGNTHS SARGRSDDYC RKRAKKDAIA YPSEAEDSPY  180
EHQSSESDDQ MLPTPVYVLS GKCYVTDEDE ASIIALAQEI QPEMPLLVVM MTKPSVKPYP  240
DLVIPKDYAL AHFPRKNQTI KLQLPDQSKK WYCEFRVKSD GGHFNLKECG FARDNHLLEG  300
DMCVFHPMMN RKGRTFKVMV HLLCKASIDH TSSKNGLTSK KNVPTLCIKE DTNEGEEIPS  360
LGHEEHGIND EEPYMMPRGT CLTRLQKKKV LGKVEAIGSD LHIYIAVMTR SSILVSLSFA  420
IKYSATYLRE GSGSLVLQVE GKSQVWHDEM REKGGAMRIR AGWTSFASDN NLREGDICLF  480
ELMKNEGGPK KMMVYIIRRE LC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLM0VW090.0M0VW09_HORVV; Uncharacterized protein
STRINGMLOC_37768.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-16B3 family protein