PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37645.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 243aa    MW: 27356.1 Da    PI: 9.2002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37645.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.1e-112248127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  ++++ C +++rtG C++G +C+F+H++
  MLOC_37645.3 22 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 48
                  5789*********************97 PP
2zf-CCCH39.11.3e-126993327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C+++++tGtCk+G++CkF+H++
  MLOC_37645.3 69 QPECQYYLKTGTCKFGPTCKFHHPR 93
                  799********************96 PP
3zf-CCCH39.21.1e-12115139327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +++C ++++tG+CkyG++CkF+H++
  MLOC_37645.3 115 ERECAYYLKTGQCKYGNTCKFNHPE 139
                   799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.7092149IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-52148IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-82348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-62650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-42748IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-66693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6946694IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-106993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-77095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-57294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568112140IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5112139IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5118138IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MWQQMTMNSG VTMQSGPYPV RPGEPDCTYY LRTGLCRFGM SCRFNHPQDR NTAIASARMK  60
GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG MVQLNALGYP LRPNERECAY  120
YLKTGQCKYG NTCKFNHPEI FNAVASSRGS PIYPPVHTSG STGPHSYTGT MASWTYPRGS  180
FIPSPRWQSP SNYTPMIVPQ GLVQVPSWNS YPVRSSHFIV MQHNVFSLSH DVFLCSFPRP  240
TGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37645.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.11e-152zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB51e-135C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A446QAP61e-175A0A446QAP6_TRITD; Uncharacterized protein
TrEMBLA0A453GAU91e-173A0A453GAU9_AEGTS; Uncharacterized protein
STRINGMLOC_37645.11e-156(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-89zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]