PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_37569.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 820aa    MW: 93013.7 Da    PI: 8.9257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_37569.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.71.1e-1956139390
          FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                   Y eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk +  +++wev  +eleHnH+++
  MLOC_37569.1  56 YLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKFNAsENHWEVVFVELEHNHPCN 139
                   99*************99988..9999**************99887...8999****************999***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-1856139IPR004330FAR1 DNA binding domain
PfamPF105511.5E-23263356IPR018289MULE transposase domain
PfamPF044341.5E-6533576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.73544580IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MDSLQSDPYT RSSLQMHLMD TSTSFENSNL DSVKHEVPTP QVGMTFETVD LAYQSYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKFNA  120
SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMVRS FSQSNYSIEA AAKCGKLRFA EGDVEALLVF FDKMQAQNSN FFYNWDMDDE  240
GRLKNVCWVD ARSRAAYQHF SDVVCFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG  300
DESPETFSWL FKKWLKCMND KAPQAIITTH SRPVVKAVSE VFLNTRHRYN LWHIMKELPD  360
MSGRVEDKEA ISLRMKKVVY DTITAADFER EWVEMANQYN LHDNRWLTTL FEERAKWVPA  420
YVKDAFWAGI STVRRSERLE AFFDGYITPE TTIKIFIEQF DIAMKLRSDR EAYDDFRSFQ  480
QRPQALSGLL FEEQFANAYT INMFQKFQDQ LKQLMNVTCT EVSRNGSIVT YTVTVIGKER  540
KFDYRVMYNS AEKEVWCICR SFQFKGILCS HALAVLKQEL VMLIPSKYIL DRWRKDYKCP  600
EESKETPIAP EAAKATGKGT KLDNVREDKV DNLYNDGHQY FADIVEMGAT DADAMEYVLS  660
VMKEAKEKVR RFEESRKEKR PEGSPVSASK KGAKSSKPPA EDVGNGTSVS ALANTAVATV  720
APTMMVAATS AAVASSTPMP VPSCTQMSVP PTMMAMATTS AAVRPGMFLV PMHPHMVFPP  780
FTPGLPTAVP PVAPPPAPTA NAVAVAPNPA KKRKKRKGNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1810814KKRKK
2810816KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_37569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619440.0AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160302.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_020183256.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLF2DDH70.0F2DDH7_HORVV; Predicted protein
STRINGMLOC_37569.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-113FAR1-related sequence 6