PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36596.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 434aa    MW: 49255.1 Da    PI: 9.3986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36596.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.2e-082148126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                  +k ++C  ++r+   tC++G  C+F+H+
  MLOC_36596.6 21 WKSAICGEYMRSRfkTCSHGVACNFIHC 48
                  7999***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR018483.3E-8226IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.3142050IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-62148IPR000571Zinc finger, CCCH-type
PRINTSPR018483.3E-84052IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNGRYFAGKQ ITCEFVALTK WKSAICGEYM RSRFKTCSHG VACNFIHCFR NPGGDYEWAD  60
WDNPPPKYWT RKMAALFGPS DDAVFDKASD APDFERLHSS DRKRLRSSDG RYISSRHRDG  120
DAHKRHSSRV FSHSKQEQSN YIMKYGHTRH SREPSTAKKQ RGHEIEDDIG RYCSPVENER  180
VSQTHKREEK HRDGHGDGAR GDNGKIKSRK HRSEQHESLE SGCSDWPSEF ADAGTSRSPS  240
CSKSTNRYSN HNRSRGQSLD DSNLERGYST ADKSSGKAHI AKSSSRHYVE DDSYGEKGSG  300
RDKSGKHSDH CDDPDDRWLA TTSDVDSDGE TQFLRSSSGI GKGGKNDNAP RDEDDRCQRS  360
SSRSARSRAN ETKSSRKRKK HHSEIRKNSD SDDSPSDSSD IRDSSSHAWR SRSRSSEEDL  420
SLHRRRKGRL GHDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_36596.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618180.0AK361818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1150D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147330.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ6YVX91e-123C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLF2DD510.0F2DD51_HORVV; Predicted protein (Fragment)
STRINGMLOC_36596.90.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.16e-42C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]