PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_36554.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YA

Protein Properties

Length: 253aa MW: 27383.5 Da PI: 10.172

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_36554.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.8	7.5e-33	97	153	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF MLOC_36554.1 97 DEPIFVNPKQYNGILRRRQLRAKLEAQNKL-TKNRKPYLHESRHLHAMKRARGSGGRF 153 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-37	95	156	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.727	96	156	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.1E-29	98	153	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-22	99	121	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-22	130	153	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MLLPSSSSSY DPKGDSFGKS VDDSMRSTLT FGEKHSVFTS QNTDYGQPMA CISYPFSDSG 60 SGVWAAYGSQ AMFHPLTAGG GSSATARVPL PLELAADEPI FVNPKQYNGI LRRRQLRAKL 120 EAQNKLTKNR KPYLHESRHL HAMKRARGSG GRFLNSKQLQ QQQQSGSACT KAIADGANSL 180 GSTYLRLGSG AAGDRPTSAS KTISSQENNK RVAALAPAFT MIPAAQKDDD FFHHHGHHLS 240 FSGHFGQSSE RYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	97	158	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_36554.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368372	0.0	AK368372.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2072N04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156071.1	1e-143	nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBL	M0VR19	0.0	M0VR19_HORVV; Uncharacterized protein
STRING	MLOC_36554.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13276	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	9e-38	nuclear factor Y, subunit A5