PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_34506.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 360aa    MW: 39103.3 Da    PI: 5.421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_34506.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY581.9e-18120183259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpkvveitYegeHnhe 59 
                   +Dgy+W+KYGqK++k+ +f+r Y+rC ++   gC++kk+++++++    p + ++tY ++H+++
  MLOC_34506.1 120 KDGYKWKKYGQKNIKNRKFARLYFRCMHSherGCWAKKQLQQEDSsigSPPLYKVTYLNDHTCH 183
                   7*************************9988899*******998752226889**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-21111184IPR003657WRKY domain
SuperFamilySSF1182904.97E-19115183IPR003657WRKY domain
SMARTSM007744.4E-25119184IPR003657WRKY domain
PfamPF031064.8E-20120183IPR003657WRKY domain
PROSITE profilePS5081114.194121166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAFQQEAVGK LREELGRGYN LSAKLLALLN QPSHLLDCRA QEMAMAISQE LSQVFRASLS  60
MLKPGDSSRV AEGRATEPEA ALTEDSIGQP TPAKDKRISG DEVTPPRIGK EEEITAEPYK  120
DGYKWKKYGQ KNIKNRKFAR LYFRCMHSHE RGCWAKKQLQ QEDSSIGSPP LYKVTYLNDH  180
TCHQVFPIVN ITSANLPATS TTTRNGAQFA PACRHLHDGG NGELEDIIMT STFTTVIGGA  240
AYAAPSSTPL PSLPPMDESP SDLASYEAGG GQSPSLLDLS LGLDEAMMDE MYFSCGSPFP  300
PVEAPAAPWS LSSLPPLPPM EASSVGPAAY MPSRGGHSMS LDAMTMTEIF LWSSPLFSPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-151211821068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_34506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186003.10.0WRKY transcription factor SUSIBA2-like
TrEMBLM0VMN80.0M0VMN8_HORVV; Uncharacterized protein
STRINGMLOC_34506.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-19WRKY DNA-binding protein 70