PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3334.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 750aa    MW: 84593.9 Da    PI: 9.0257
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3334.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.51.8e-0732734990
         FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 e + r+ra++ t+C a+++vk++ d+  +v+  +l+HnH+++
  MLOC_3334.2 32 EPKFRKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHPVS 73
                 556789*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-53474IPR004330FAR1 DNA binding domain
PfamPF105511.9E-28194287IPR018289MULE transposase domain
PROSITE profilePS509669.31480516IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-5484512IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-6491518IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDRTLAFQKL AWCSITTWRS TGSTVGGRPR YEPKFRKRAS STTNCPARIR VKLWGDKLLH  60
VELANLDHNH PVSPAMARFL NSYKQLSGPA KRRLRMGGPG AMPVEEPSKM PVDKLGALEE  120
LLFGESKNHS FVERGRLKLQ PGDSEALRLF FTRMQAKNAN FFNVIDLDDE GCVRNVFWAD  180
AWSRAMYEYY NDAITLDTSY VVSKHDMPLV TFLGVNHHGQ SVLLGCSLLS DETAETYTWL  240
FKAWVACMSG NLPKAIITDQ CRGIQSAVAE VVPGVRHRIC LHQIMKKAAD QLSGLSEYKA  300
INKALQKAAY DSLTVDEFEG EWSTLITYNG LQGHDWLRSL YECRFSWVPI FLKDAFWAGM  360
SATQRNETIT PFFEGYVDLK TSLKQFLSKY EMILQSKYEK EAQADFETFH KQRPPVSKFY  420
MEEQLSKVYT HNMFKKFQDE IEAIMYCHVS LMNGDGPIST YNVKECIFLE DGKRTMSKIF  480
AVTYNTEEKD ITCICGGFQF SGILCRHSLS VLKFQQVREI PSQYVLDRWK KDFRQLHVMG  540
RLSSDIVPDN RVDRYDYLSM RCLQLVDSAV LSDKCRLALR LVREVEKFLL SSNTHDDTQP  600
RIKSRIPKVK PNTVTGQNLV NLVTDNGNGG PKGPEASASV QAPQIQKGVA EKGVVPAGYI  660
GMPANVQQFM GNQAAIRPSI VYMVPSGVDP QAFGNGVLMP VMYQQMFQIP QQPNGTAQDT  720
LANGKRKRPR AQKPTETSHQ SNGTSGPAAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3334.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189241.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBLM0VL170.0M0VL17_HORVV; Uncharacterized protein
STRINGMLOC_3334.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-128FAR1-related sequence 6