PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_3334.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 813aa    MW: 91962.2 Da    PI: 8.8193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_3334.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.71.7e-1753136190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C a+++vk++ d+  +v+  +l+HnH+++
  MLOC_3334.1  53 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPARIRVKLWGDKLLHVELANLDHNHPVS 136
                  5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1553137IPR004330FAR1 DNA binding domain
PfamPF105512.1E-28257350IPR018289MULE transposase domain
PROSITE profilePS509669.31543579IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-5547575IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
METEEAAAPP KNPRRPRRRD LNALDPYLEE SDGQDIGIPE VGMVFNNHME VNRFYRRYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA RIRVKLWGDK  120
LLHVELANLD HNHPVSPAMA RFLNSYKQLS GPAKRRLRMG GPGAMPVEEP SKMPVDKLGA  180
LEELLFGESK NHSFVERGRL KLQPGDSEAL RLFFTRMQAK NANFFNVIDL DDEGCVRNVF  240
WADAWSRAMY EYYNDAITLD TSYVVSKHDM PLVTFLGVNH HGQSVLLGCS LLSDETAETY  300
TWLFKAWVAC MSGNLPKAII TDQCRGIQSA VAEVVPGVRH RICLHQIMKK AADQLSGLSE  360
YKAINKALQK AAYDSLTVDE FEGEWSTLIT YNGLQGHDWL RSLYECRFSW VPIFLKDAFW  420
AGMSATQRNE TITPFFEGYV DLKTSLKQFL SKYEMILQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK VYTHNMFKKF QDEIEAIMYC HVSLMNGDGP ISTYNVKECI FLEDGKRTMS  540
KIFAVTYNTE EKDITCICGG FQFSGILCRH SLSVLKFQQV REIPSQYVLD RWKKDFRQLH  600
VMGRLSSDIV PDNRVDRYDY LSMRCLQLVD SAVLSDKCRL ALRLVREVEK FLLSSNTHDD  660
TQPRIKSRIP KVKPNTVTGQ NLVNLVTDNG NGGPKGPEAS ASVQAPQIQK GVAEKGVVPA  720
GYIGMPANVQ QFMGNQAAIR PSIVYMVPSG VDPQAFGNGV LMPVMYQQMF QIPQQPNGTA  780
QDTLANGKRK RPRAQKPTET SHQSNGTSGP AAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318RRPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_3334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189240.10.0protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLF2EHX90.0F2EHX9_HORVV; Predicted protein
STRINGMLOC_3334.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-132FAR1-related sequence 6