PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_28796.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 406aa    MW: 46263.9 Da    PI: 9.7291
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_28796.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-13313395286
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 
                   +k+++ sd   ++ + lp +f     +kk++++ l+ +d +++sWevk ++ k++++      +++GW +F+++ngLk gD ++Fk+++
  MLOC_28796.5 313 LKKEIGSDGVLKA-FHLPDHFG----YKKNCKILLRPMD-RNESWEVKGSVIKRPNTvytmNRFRGGWAKFCEENGLKKGDLCTFKVVN 395
                   5666666666666.78888885....5566754555444.779*******988888864334456*********************654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.811185IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-92185IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-72385IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-4107202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-5108202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.711108204IPR003340B3 DNA binding domain
PfamPF023621.2E-10327395IPR003340B3 DNA binding domain
CDDcd100173.08E-9330392No hitNo description
SuperFamilySSF1019369.42E-11330403IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-12331404IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221339406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MQHISDEIAG WFVGTGGRGA GRTVLIISPF GKKLWDITVG RYSNGLFLGG QWPQFVAAHG  60
IGIGWYLVFK QVRRGIFTLK VFDNNFVIKP FGVTITVLSQ LKNACARKPQ FIVPLQTSFK  120
EKMLIPHEFL RRGYISEEDL NKRPLMATFL SHWHIGLERD GPDVFFAGSV WADFLDMLDL  180
SETDVLLIKY QGCMNFSIEK FGHGDDEHIE EEPGCSEESK QSPGAQSQEE EHVSTRKRKQ  240
SNCKAPGAQG QEGKHVSTRT RKRKESNCKT PRAQGQEGER SKGERMLERH TTSRHVNMSC  300
FFEIGKTGSQ DWLKKEIGSD GVLKAFHLPD HFGYKKNCKI LLRPMDRNES WEVKGSVIKR  360
PNTVYTMNRF RGGWAKFCEE NGLKKGDLCT FKVVNGKLWE VNIERR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239TRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_28796.5
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181881.11e-150putative B3 domain-containing protein Os04g0346900 isoform X4
TrEMBLM0VHL20.0M0VHL2_HORVV; Uncharacterized protein
STRINGMLOC_28796.50.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.39e-08B3 family protein