PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_28796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 261aa MW: 29886.7 Da PI: 8.4066 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.2 | 6.8e-14 | 168 | 250 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 +k+++ sd ++ + lp +f +kk++++ l+ +d +++sWevk ++ k++++ +++GW +F+++ngLk gD ++Fk+++ MLOC_28796.1 168 LKKEIGSDGVLKA-FHLPDHFG----YKKNCKILLRPMD-RNESWEVKGSVIKRPNTvytmNRFRGGWAKFCEENGLKKGDLCTFKVVN 250 5666666666666.78888886....5566754555444.779*******988888864334456*********************764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 7.613 | 1 | 59 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-11 | 182 | 250 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.92E-11 | 184 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.40E-10 | 185 | 247 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.1E-13 | 186 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.221 | 194 | 261 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MATFLSHWHI GLERDGPDVF FAGSVWADFL DMLDLSETDV LLIKYQGCMN FSIEKFGHGD 60 DEHIEEEPGC SEESKQSPGA QSQEEEHVST RKRKQSNCKA PGAQGQEGKH VSTRTRKRKE 120 SNCKTPRAQG QEGERSKGER MLERHTTSRH VNMSCFFEIG KTGSQDWLKK EIGSDGVLKA 180 FHLPDHFGYK KNCKILLRPM DRNESWEVKG SVIKRPNTVY TMNRFRGGWA KFCEENGLKK 240 GDLCTFKVVN GKLWEVNIER R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 94 | TRKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_28796.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181881.1 | 5e-83 | putative B3 domain-containing protein Os04g0346900 isoform X4 | ||||
TrEMBL | M0VHL2 | 0.0 | M0VHL2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_28796.5 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-07 | B3 family protein |