PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_25058.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 323aa    MW: 35673.7 Da    PI: 8.7231
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_25058.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-18208298199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   f+k +++s+v +  +l lp +f+++h  + +e++t++lede+   ++ k+   + +++  l++GW++F+  +++k+gD+vvF+l+++ +f  +v ++
  MLOC_25058.2 208 FVKHMLHSHVVQGFWLGLPSNFCNKHL-P-KEDTTIVLEDEDRHNYDAKY--LGAKQG--LSAGWRGFAINHDIKVGDVVVFQLVSSAKF--KVYIL 296
                   899********************9995.3.3667****************..888877..9**********************9876666..99998 PP

                   -S CS
            B3  98 rk 99 
                   r+
  MLOC_25058.2 297 RA 298
                   86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-24203299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-20203299IPR015300DNA-binding pseudobarrel domain
CDDcd100178.58E-27206297No hitNo description
PROSITE profilePS5086312.915208299IPR003340B3 DNA binding domain
SMARTSM010199.9E-20208299IPR003340B3 DNA binding domain
PfamPF023621.3E-16208298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAIEQSLKRK RGRPAGGGSP SANKSQRDKK VMEHKIALVH RRLALLDSES DKDADVQPTV  60
TMDDKLAAVV DQQPVIIKCE DIDDEDEHVP LRIMRSPRAD SEQKKLLDVS QTHNAQDADT  120
AKQKKGGRLV NAKSNMGQNL KLSIPRRTLV ESGGSNSRRS DIDDDLVPMQ VAAVNCHKTC  180
ASVQGKFGSA MERAKEVLLK LPAEHPSFVK HMLHSHVVQG FWLGLPSNFC NKHLPKEDTT  240
IVLEDEDRHN YDAKYLGAKQ GLSAGWRGFA INHDIKVGDV VVFQLVSSAK FKVYILRANN  300
FTTTDGALGL LCLEAGKEKI LSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_25058.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-86HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163752.11e-178B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A287HF660.0A0A287HF66_HORVV; Uncharacterized protein
TrEMBLA0A287HF700.0A0A287HF70_HORVV; Uncharacterized protein
STRINGMLOC_25058.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein