PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_25058.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 321aa MW: 35417.4 Da PI: 8.7231 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 206 | 296 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f+k +++s+v + +l lp +f+++h + +e++t++lede+ ++ k+ + +++ l++GW++F+ +++k+gD+vvF+l+++ +f +v ++ MLOC_25058.1 206 FVKHMLHSHVVQGFWLGLPSNFCNKHL-P-KEDTTIVLEDEDRHNYDAKY--LGAKQG--LSAGWRGFAINHDIKVGDVVVFQLVSSAKF--KVYIL 294 899********************9995.3.3667****************..888877..9**********************9876666..99998 PP -S CS B3 98 rk 99 r+ MLOC_25058.1 295 RA 296 86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-24 | 201 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 201 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-26 | 204 | 295 | No hit | No description |
PROSITE profile | PS50863 | 12.915 | 206 | 297 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-16 | 206 | 296 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-20 | 206 | 297 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MAIEQSLKRK RGRPAGGGSP SANKSQRDKK VMEHKIALVH RRLALLDSES DKDADVQPTV 60 TMDDKLAAVV DQQPVIIKCE DIDDEDEHVP LRIMRSPRAD SEQKKLLDVS QTHNAQDADT 120 AKKKGGRLVN AKSNMGQNLK LSIPRRTLVE SGGSNSRRSD IDDDLVPMVA AVNCHKTCAS 180 VQGKFGSAME RAKEVLLKLP AEHPSFVKHM LHSHVVQGFW LGLPSNFCNK HLPKEDTTIV 240 LEDEDRHNYD AKYLGAKQGL SAGWRGFAIN HDIKVGDVVV FQLVSSAKFK VYILRANNFT 300 TTDGALGLLC LEAGKEKILS E |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_25058.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-86 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163752.1 | 0.0 | B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A287HF66 | 0.0 | A0A287HF66_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287HF70 | 0.0 | A0A287HF70_HORVV; Uncharacterized protein | ||||
STRING | MLOC_25058.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-37 | B3 family protein |