PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_23884.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 406aa    MW: 46191.9 Da    PI: 7.8551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_23884.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.4e-2056147199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffk + +    ++ r+++p kfa+++ g++++s+  +l+ +sg++W v +  +k  ++ ++++GW +Fvka++L+e+D +vF+++g+s+f   v +f
  MLOC_23884.1  56 FFKLM-TQ--DSQERIRIPDKFASSFIGQTQSSRGFRLKAPSGETWHVGV--TKVADGLFFSSGWGDFVKAHELQENDLLVFTFSGNSSF--DVLIF 145
                   56666.33..4455689*********88889999****************..**********************************9999..99999 PP

                   -S CS
            B3  98 rk 99 
                   ++
  MLOC_23884.1 146 DA 147
                   86 PP
2B349.48.2e-163013771489
                   T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
            B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                   + l++p kfa +h     +++  l l+  + ++W v++ +y  ++sg+ + ++ W +Fv +n+L+egD+++F+l+++ +
  MLOC_23884.1 301 NFLYIPVKFAVKHlH-M-RSHEVLLLRPNREERWHVRYyCYeGGSSGGSFKGQSWAKFVCDNKLREGDVCTFELMKDAR 377
                   679**********53.2.2343566666888*******55566666669999*********************998733 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2249149IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2153149IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.91753148IPR003340B3 DNA binding domain
CDDcd100173.05E-2155146No hitNo description
PfamPF023621.4E-1656147IPR003340B3 DNA binding domain
SMARTSM010193.1E-1456148IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18279394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-19280376IPR015300DNA-binding pseudobarrel domain
CDDcd100179.40E-14285375No hitNo description
PROSITE profilePS5086311.984288396IPR003340B3 DNA binding domain
SMARTSM010193.8E-8291398IPR003340B3 DNA binding domain
PfamPF023621.2E-13301377IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLVLSLYISP PPPPPHSPGR IRESMKSEMG KKGCERCKKW QEHYYWEHMD VSKTRFFKLM  60
TQDSQERIRI PDKFASSFIG QTQSSRGFRL KAPSGETWHV GVTKVADGLF FSSGWGDFVK  120
AHELQENDLL VFTFSGNSSF DVLIFDASGY EKLSSLFAGA DSMRKHFDGM VGQQVEQYSQ  180
SDDDDDDYGD NADDDTSVPS QSIESRQKVS ASKKISGKSK PRKELLESPN SSSSCDVKHE  240
ATEEEENDDD TYADFDCYYS RAAKQLPDDE KREIIGLASI QPGNPAFITV LLRAHLPPKV  300
NFLYIPVKFA VKHLHMRSHE VLLLRPNREE RWHVRYYCYE GGSSGGSFKG QSWAKFVCDN  360
KLREGDVCTF ELMKDARNEK KKKARTTMTV HVARRRKSNG RFALVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380396KKKARTTMTVHVARRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_23884.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738480.0AK373848.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3045G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176109.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-107Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLF2ECH30.0F2ECH3_HORVV; Predicted protein (Fragment)
STRINGMLOC_23884.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-32B3 family protein