PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_21982.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 349aa MW: 35282.9 Da PI: 7.6506

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_21982.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.4e-39	41	100	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ MLOC_21982.1 41 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 100 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	38	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	43	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MAGAGGGAAA AAAVQPAAAG AGRSSSSSAG GAAGAVADPR AEALRCPRCD SANTKFCYYN 60 NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GGCRKNKRSR SSNGGSRPAS CAIVASSNAG 120 VTSSTSISMS LPPPGSLSSA LGLHGHGHGS SSLASLLLGS GASGGDHLGL FHAMQSVVSD 180 ATAYEMHQQH QNQVDQLLGL GYGDGNGNAS QIHIKPWQHH LQDGAGGLFD GFYGPLLSGS 240 IVPGLEELHV KAEATAGEHH HQQHKKATDG DQESWDQHPT SSSNVEANIM ASDALMAAAA 300 AASMNPAVSN AATAPASSPL MYWGNGGIGG SPAAWSDMAN CGSSIATFF

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MAGAGGGAAA AAAVQPAAAG AGRSSSSSAG GAAGAVADPR AEALRCPRCD SANTKFCYYN  60
NYSLSQPRHF CKACKRYWTR GGTLRNVPVG GGCRKNKRSR SSNGGSRPAS CAIVASSNAG  120
VTSSTSISMS LPPPGSLSSA LGLHGHGHGS SSLASLLLGS GASGGDHLGL FHAMQSVVSD  180
ATAYEMHQQH QNQVDQLLGL GYGDGNGNAS QIHIKPWQHH LQDGAGGLFD GFYGPLLSGS  240
IVPGLEELHV KAEATAGEHH HQQHKKATDG DQESWDQHPT SSSNVEANIM ASDALMAAAA  300
AASMNPAVSN AATAPASSPL MYWGNGGIGG SPAAWSDMAN CGSSIATFF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_21982.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368979	0.0	AK368979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083D03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159095.1	1e-175	dof zinc finger protein DOF5.8-like
TrEMBL	F2DYL0	0.0	F2DYL0_HORVV; Predicted protein
STRING	MLOC_21982.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-28	Dof family protein